Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01356 ATGATTATGGAGATCCGAAGCCCCAGCCTCATCTCTCTTCTCTCTCGACACTCCACCGCCTCACCTCACCGCGTCACTCTCTCATCTCTCCCCTCACCTCGTCAGTTGTCACTCTCAGTCTCTCACAGCCTCACCTCATCACTCTCTCGCTCTCAGTCTTGCACTCATCACTCCCTCGCTCTCGGTCTCGCACTCATAAGCTCGTGGTCGCAGTCTCGTACCCCTGCTTCGCTTCATCGGCGGCAGAAGCAGACGGAACCAGTCAAGCAGCATCTACTCCGTCGGGTGGTGGTGGTGGTCATTGTCTTCTTGTTTGGTCGCGTCTCGAAACCAGTCAACCAGTTCTCCTTCATCAAGTTTAAAAGTTCTCTAAACTTCCATTGCCCACAAATGGAGAATGGTATCATGCACGAGCCTTCTCCTTCCATACTCGTCAGCCGGTTTAACGCCTTACTTCCACGACGCCAAGCCTACCTCAAGGCTTTCTCTACCAAAAAAATTGTTCAGACACATGGGCTCTTGTCAGAACTCACCTCCAATGTGAACCCCATCATTACCGATCTCAATATCATTGTCAGCCAGCAGAGTAAACACTCTAGTTCAATTATGGATAATGTTGGTGGTGATAAGTTGGATTCAACGGAAACTGTAGGTAATACAAGAGAAGGAGGGTTGAATGAATGGCAGCAAAAGAGATTTTCTAGTGATGGTTGGAACATATTTCAAACTTCCAAGACTTATAATCTCAATGATGAACAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTGACAAAGGCCGTGAAATTCTTAGTACTAAGCTTTTGTTGGTGGAGCAGCCTGGCAGAAATGGTTTAGGGAGCAAGTTTCCATTGGCATCATGGCAGGACACTGAAGAAGAGGAGTTTGATTGGAAAGATATGAATCCAGGATTAGTAGACTGTAATACAAACAGTAGTTCTATGCAATCAAGTGTTAGATTCTCCAGGAAAAGGAAGTTATCTAATGATCTATCTAATTCTTCACAGTACCCCTTTAATATGGGGGCTGCTCTCTTTGCTGTCAATGCTCATGCTACTTGCCCTTCCGACTTGAATCCAGCATTTTCATTGCAAAAACGTCCTAGGAGTCTGTTTGAACCAATAAACGTTAATAATAACACCAATGTGGGTCATGGTCCAAATAGAACTCTGTTTATACATGACCAGTTGCCTAATCAACCTGGACCAATTTCCTCTAACCTGCAAAATCATGGACAAGCACCTCAACTACAGTTTCTTCCACCTCAAGTTCCATCTTCAACACAAATTAGTCATGGTGCCTTAATAAGTACGCCCATCTCAAATCCATTACCTGATATGCAGGGCCAAAGTTTACATTTACATGGGGGAACCTTGCCACTTTTACATCCAAGCCTCCCAACTGCTCCATCACAAATGATGTCTCATCCCCATGCCGATGCTTCGGTGACAAGTCAACCACCACCTGCATATCTTAATTTGATTAGTTCACTAGTGAACCATGGTGTGATCTCGGTAATTAATCCCCCCACCAATCCACCCACCGGACTGGATTCCATTGTGACGGAGTTTGATGCAGATATCTTGAAGGTTTGTTATGAAGGTGTAATTAGTGCCTTATATGTTGAGCTTCCTAGACAATGCACGAGCTGCGGTCTCCAATTCAAAAGGCAAGATGAGCATAGTATACATATGAATTGGCACGTGACTAGGAACTGA 1749 0.4483 MIMEIRSPSLISLLSRHSTASPHRVTLSSLPSPRQLSLSVSHSLTSSLSRSQSCTHHSLALGLALISSWSQSRTPASLHRRQKQTEPVKQHLLRRVVVVVIVFLFGRVSKPVNQFSFIKFKSSLNFHCPQMENGIMHEPSPSILVSRFNALLPRRQAYLKAFSTKKIVQTHGLLSELTSNVNPIITDLNIIVSQQSKHSSSIMDNVGGDKLDSTETVGNTREGGLNEWQQKRFSSDGWNIFQTSKTYNLNDEQQRQSPRALIEAYGCDKGREILSTKLLLVEQPGRNGLGSKFPLASWQDTEEEEFDWKDMNPGLVDCNTNSSSMQSSVRFSRKRKLSNDLSNSSQYPFNMGAALFAVNAHATCPSDLNPAFSLQKRPRSLFEPINVNNNTNVGHGPNRTLFIHDQLPNQPGPISSNLQNHGQAPQLQFLPPQVPSSTQISHGALISTPISNPLPDMQGQSLHLHGGTLPLLHPSLPTAPSQMMSHPHADASVTSQPPPAYLNLISSLVNHGVISVINPPTNPPTGLDSIVTEFDADILKVCYEGVISALYVELPRQCTSCGLQFKRQDEHSIHMNWHVTRN 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01356 582 ProSitePatterns Zinc finger C2H2 type domain signature. 558 578 IPR013087 -
Aip05g01356 582 MobiDBLite consensus disorder prediction 201 221 - -
Aip05g01356 582 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 141 206 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aip05g01356 582 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 250 582 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aip05g01356 582 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 141 206 - -
Aip05g01356 582 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 250 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01356 Aip-Chr5 20118609 20122614 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01356 465 582 C2H2 Transcription Factor Family AT4G04885 46.774 7.44e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01356 K14400 - aip:107640327 791.186