Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01355 ATGGCGAATGGTATCACGCACGAGCCTTCTCCTTCCATGCTAGTCCGCCGGTTTAACGCCTTACTTCCCCAGTGCCAAGGCTACCTCAAGGCCGAAGAAATTGTTTGGACGTATGGGCTATTGTTGTCAGAGCTCACCTCCAATGTGAACTCCATCATTAGCGATTTCACTATCATTGCCGGCCAACAGAGGAAACACGCCAAGGGCATCGCGGATGCCATTTGCAATCGGATTCTTGAGGTGCCTGCTGATAAAAAAATTCCTTCTCTCTATCTTCTGGACAGTATTGTGAAGAATTTTGGCCAGGAATATGTTAAACACTTCTCTTTACGTCTACCTCAAGTTTACTGTGAGGCATACAGGCAGGTCCAGCCCAATCTGCATTCTGTTCTGCAACGTCTCTTTGGTACCTGGTCAAAGATCTTTCCTCCCTCTGTCCTAAGTAATATTGAAGCTCAATTGCAATCTTCACCAGCAGTTAATAATCAACAATCCTTTGCTAATCACCTTGGGGCATATGATTTTCGTGGACCGATTCTTGGGGCTCATGTTATTAAACCACAATCTTTGCAGCAGATGGAACACTCTAGTTCAATTATGGATAATGTTGGTGGTGATAAGTTGGATTCAACGGAAACTGTAGGTAATACAAGAGAAGGAGGGTTGAATGAATGGCAGCAAAAGAGATTTTCTAGTGATGGTTGGAACATATTTCAAACTTCCAAGACTTATAATCTCAATGATGAACAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTGACAAAGGCCGTGAAATTCTTAGTACTAAGCTTTTGTTGGTGGAGCAGCCTGGCAGAAATGGTTTAGGGAGCAAGTTTCCATTGGCATCATGGCAGGACACTGAAGAAGAGGAGTTTGATTGGAAAGATATGAATCCAGGATTAGTAGACTGTAATACAAACAGTAGTTCTATGCAATCAAGTGTTAGATTCTCCAGGAAAAGGAAGTTATCTAATGATCTATCTAATTCTTCACAGTACCCCTTTAATATGGGGGCTGCTCTCTTTGCTGTCAATGCTCATGCTACTTGCCCTTCCGACTTGAATCCAGCATTTTCATTGCAAAAACGTCCTAGGAGTCTGTTTGAACCAATAAACGTTAATAATAACACCAATGTGGGTCATGGTCCAAATAGAACTTTGTTTATACATGACCAGTTGCCTAATCAACCTGGACCAATTTCCTCTAACCTGCAAAATCATGGACAAGCACCTCAACTACAGTTTCTTCCACCTCAAGTTCCATCTTCAACACAAATTAGTCATGGTGCCTTAATAAGTACGCCCATCTCAAATCCATTACCTGATATGCAGGGCCAAAGTTTACATTTACATGGGGGAACCTTGCCACTTTTACATCCAAGCCTCCCAACTGCTCCATCACAAATGATGTCTCATCCCCATGCCGATGCTTCGGTGACAAGTCAACCACCACCTGCATATCTTAATTTGATTAGTTCACTAGTGAACCATGGTGTGATCTCGGTAATTAATCCCCCCACCAATCCACCCACCGGACTGGATTCCATTGGGACAGAGTTCGATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACGGTGATCTTCCTAGACAATGCACGAGCTGCGGTCTCCGATTCAAAAGGCAAGATGAGCACAGTAGACATATGGATTGGCACGTGACTAGGAACCGAATGTCGAAAAGCCGGAAGCAGAAGGGGTCTCAAAAGTGGTTTGCAAGTGGGAGCATGTGGCTAAGTGGTGCAGAGGGTCGATGTGCACTGTGTGGAGAGGGCTTCGATGAGTTCTACAGCGACGAAATGGATGAGTGGATGTATAGAGGAGCCACATACCTTAAGGCACCCATGGGAATAACATTGGCCACCATGGACAGACATCAACTAGGGCCCATTGTTCATTCCAAATGCAGATCTGACTCTGACTCTACTATGCCCTCAACCAACATTTCCAGCAATCGGTATCCATGGCCACCGCCACCCATCTGCCTCCGCGCCTCTTCCTTGATGAGATTGCTTCCTCCGTTCCCTGCCATAATCGGAGGCCCTATTTTCATTTACCCAATATCCAATTTTCTCTTTTTTTGTCGCCATCGCCTCCATCATCTTGTACCACACCACCATGGCTCCGTTAATTCTTTCCGCTTTCCGTTAGCTCCGACATGA 2229 0.4477 MANGITHEPSPSMLVRRFNALLPQCQGYLKAEEIVWTYGLLLSELTSNVNSIISDFTIIAGQQRKHAKGIADAICNRILEVPADKKIPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAYRQVQPNLHSVLQRLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQSFANHLGAYDFRGPILGAHVIKPQSLQQMEHSSSIMDNVGGDKLDSTETVGNTREGGLNEWQQKRFSSDGWNIFQTSKTYNLNDEQQRQSPRALIEAYGCDKGREILSTKLLLVEQPGRNGLGSKFPLASWQDTEEEEFDWKDMNPGLVDCNTNSSSMQSSVRFSRKRKLSNDLSNSSQYPFNMGAALFAVNAHATCPSDLNPAFSLQKRPRSLFEPINVNNNTNVGHGPNRTLFIHDQLPNQPGPISSNLQNHGQAPQLQFLPPQVPSSTQISHGALISTPISNPLPDMQGQSLHLHGGTLPLLHPSLPTAPSQMMSHPHADASVTSQPPPAYLNLISSLVNHGVISVINPPTNPPTGLDSIGTEFDPDILKVRHEGVISALYGDLPRQCTSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSMWLSGAEGRCALCGEGFDEFYSDEMDEWMYRGATYLKAPMGITLATMDRHQLGPIVHSKCRSDSDSTMPSTNISSNRYPWPPPPICLRASSLMRLLPPFPAIIGGPIFIYPISNFLFFCRHRLHHLVPHHHGSVNSFRFPLAPT 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01355 742 Pfam CID domain 50 148 IPR006569 -
Aip05g01355 742 ProSitePatterns Zinc finger C2H2 type domain signature. 555 575 IPR013087 -
Aip05g01355 742 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 608 663 - -
Aip05g01355 742 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 605 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aip05g01355 742 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 608 663 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aip05g01355 742 SMART 558neu5 33 155 IPR006569 -
Aip05g01355 742 CDD CID_Pcf11 42 156 - -
Aip05g01355 742 ProSiteProfiles CID domain profile. 30 158 IPR006569 -
Aip05g01355 742 SUPERFAMILY ENTH/VHS domain 33 156 IPR008942 -
Aip05g01355 742 Gene3D - 26 157 IPR008942 -
Aip05g01355 742 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01355 Aip-Chr5 20108114 20112424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01355 462 663 C2H2 Transcription Factor Family AT4G04885 48.548 1.65e-59 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip05g01355 CID 1.1e-11 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01355 K14400 - aip:107640327 666.766