Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01330 ATGGAGCTTCAAGGTCCCTCAGATCAGTGCCATCCCGAGAGGAAAGGTCAGAAGAGGAAGCTCGAGGACGAGTTCGAAGAAGACCACCACCAGATCTCCACTCCTCCTACCGGCGACGCCCGCGACGCCATCCTTGCCGACGTCCAGGAGCAGGTTTCCATCCTCAACTCTACTTTCTCATGGAAGGAGTCAGATCGAGCCGCCGCCAAGCGCGCCACTCACGCGCTCGCCGATCTTGCCAAAAACGAGGAAGTGGTAAACGTGATTGTCGAAGGAGGAGCTATTCCGGCTTTGGTTCAGCACCTCCAAGCTCCCCTCGTGACGGAAGAAGACCTCGTTCAGAAGCTGTTGCCGTTTGAGCATGAGGTCGAGAAAGGGAGTGCTTTTGCACTTGGACTTCTTGCCGTCAAGCCTGAACATCAACAGCTCATTGTTGACAATGGTGCCTTAAAACACCTTGTTGATCTACTAAAGAGGCATAAGAATGGTTTAACATCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGACGCTATCACTAATCTTGCTCATGAGAACAGCTGCATTAAAACCCGAGTCAGGATGGAAGGTGGAATTCCGCCTCTTGTTCATTTGCTTGAATTTGCAGATACAAAGGTGCAGAGAGCAGCTGCTGGTGCATTGCGAACCCTTGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTACCAACTCTGATTCTAATGCTTCGTGCTGAAGATGCAGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCATTCCTCCCCCAATATCAAGAAAGAAGTTCTTCTTGCTGGGGCTTTGCAACCTGTTATTGGATTGCTTAGTTCTTGTTGCTCCGAGAGTCAGAGGGAAGCTGCCTTGTTGCTTGGACAGTTTGCTGCAACTGATTCAGATTGCAAGGTTCACATTGTACAGAGGGGTGCTGTTCGACCTCTGATAGAGATGCTCCATTCCCCTGATGTGCAGCTCAGAGAAATGTCTGCTTTTGCATTGGGGAGATTGGCCCAGGACACACATAACCAAGCTGGTATTGCTCACAACGGTGGCTTAGTCCCTTTGCTGAAGCTCCTTGATTCGAAGAATGGGTCTTTGCAACATAATGCAGCCTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCAGATTTTATTAGGGTAGGCGGAATTCAGAGATTGCAGGATGGAGAATTCATTGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTGGAAGAGAAGATACATGGCCGTGTGTTGAACCATTTGCTATATCTGATGCGAGTTTCAGAGAAGGCCTTCCAGAGAAGAGTGGCTTTGGCTCTTGCTCATCTTTGTGCAGCAGAGGATCAGAAAAAAATATTTATCGATCACCATGGTCTTGAGTTGCTTATTGGGCTGCTTGGTTCATCCAGCCCTAAGCAGCAACTAGAGGGGGCTGTTGCTTTGTTTAAGGTGGCTAACAAAGCTATGACTCTGTCTCCTGTTGATGCTGCTCCTCCTTCTCCAACACCCCAGGTCTATTTAGGAGAGCAATATGTCAACAATTCTACCTTGTCCGATGTAACATTTTTGGTTGAAGGCAAACGGTTTTTTGCTCACAGAATCTGCCTGCTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTACAGGGAGAAGGATGCAAGAGACATTGAGATTCCAAATATTAGATGGGAGGTCTTTGAACTGATGATGAGATTTATATATACTGGGTCAGTTGATGTCACTCTTGATATTGCCCAAGATCTACTCCGAGCGGCTGATCAGTATCTTTTAGAGGGACTTAAGAGACATTGTGAATACACCATTGCACAGGATATATCACTAGAGAACGTGTCAAGTATGTACGAACTTTCAGAAGCTTTTAATGCTATATCATTAAGGCACGCATGCATCCTTTTTATCCTGGAGCAATTTGATAAACTGAGTGCAAGGCCAGGACACACACTTCTGATTCAGCGGATAACTCCAGAGATCCGGAATTACTTTGTTAAAGCTCTTACCAAGGCCAATTCCAACACCCAGCTGTAG 2124 0.4586 MELQGPSDQCHPERKGQKRKLEDEFEEDHHQISTPPTGDARDAILADVQEQVSILNSTFSWKESDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVQHLQAPLVTEEDLVQKLLPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALKHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSCIKTRVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRAEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLHSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALALAHLCAAEDQKKIFIDHHGLELLIGLLGSSSPKQQLEGAVALFKVANKAMTLSPVDAAPPSPTPQVYLGEQYVNNSTLSDVTFLVEGKRFFAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRHCEYTIAQDISLENVSSMYELSEAFNAISLRHACILFILEQFDKLSARPGHTLLIQRITPEIRNYFVKALTKANSNTQL 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01330 707 Gene3D - 297 517 IPR011989 -
Aip05g01330 707 SUPERFAMILY POZ domain 532 635 IPR011333 -
Aip05g01330 707 SMART arm_5 469 509 IPR000225 GO:0005515
Aip05g01330 707 SMART arm_5 229 269 IPR000225 GO:0005515
Aip05g01330 707 SMART arm_5 82 136 IPR000225 GO:0005515
Aip05g01330 707 SMART arm_5 137 185 IPR000225 GO:0005515
Aip05g01330 707 SMART arm_5 186 227 IPR000225 GO:0005515
Aip05g01330 707 SMART arm_5 354 394 IPR000225 GO:0005515
Aip05g01330 707 SMART arm_5 313 353 IPR000225 GO:0005515
Aip05g01330 707 SMART arm_5 271 311 IPR000225 GO:0005515
Aip05g01330 707 SUPERFAMILY ARM repeat 439 611 IPR016024 -
Aip05g01330 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 240 282 IPR000225 GO:0005515
Aip05g01330 707 SUPERFAMILY ARM repeat 59 413 IPR016024 -
Aip05g01330 707 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 9 704 - -
Aip05g01330 707 CDD BTB_POZ_ARIA_plant 528 643 - -
Aip05g01330 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 366 IPR000225 GO:0005515
Aip05g01330 707 ProSiteProfiles BTB domain profile. 541 608 IPR000210 GO:0005515
Aip05g01330 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 198 233 IPR000225 GO:0005515
Aip05g01330 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 148 188 IPR000225 GO:0005515
Aip05g01330 707 MobiDBLite consensus disorder prediction 7 35 - -
Aip05g01330 707 Gene3D - 171 296 IPR011989 -
Aip05g01330 707 Gene3D Potassium Channel Kv1.1; Chain A 522 667 IPR011333 -
Aip05g01330 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 149 IPR000225 GO:0005515
Aip05g01330 707 Gene3D - 48 170 IPR011989 -
Aip05g01330 707 Pfam BTB/POZ domain 534 636 IPR000210 GO:0005515
Aip05g01330 707 MobiDBLite consensus disorder prediction 1 39 - -
Aip05g01330 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 365 407 IPR000225 GO:0005515
Aip05g01330 707 SMART BTB_4 541 638 IPR000210 GO:0005515
Aip05g01330 707 Pfam Armadillo/beta-catenin-like repeat 313 352 IPR000225 GO:0005515
Aip05g01330 707 Pfam Armadillo/beta-catenin-like repeat 194 226 IPR000225 GO:0005515
Aip05g01330 707 Pfam Armadillo/beta-catenin-like repeat 229 268 IPR000225 GO:0005515
Aip05g01330 707 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 9 704 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01330 Aip-Chr5 19494416 19502470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01330 297 411 U-box Gene Family AT3G46510 30.769 2.49e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Aip05g01330 BTB 6.1e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01330 - - gmx:100812456 1225.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01330 05 19494416 19502470 Aip09g03879 09 145302379 145310671 PCT