Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01301 ATGCTTCTTGAAGTTCCCAATATGGCAGCCAATGTTCATGATGCAAAGCGCAAAGTCATTAGTAAGAACTTCCGCCGCTTACTTGAGGTGAGTGACAAGCAAACGTTTACTGGTCCACCTGAAAATGTCAGAGACCATGTTATGGCTGCCACAAGGGCTCTTACCAAAGGAGACTTCAACAAGGCTTATGACATCATTGTGTCTCTTGACGTTTGGAAGTTTGTTAGAAACAGAGATACTGTACTTGCAATGCTGAAAGATAAGATCAAGGAGGAGGCATTGAGGACATATCTCTTTACGTTCTCATCATCTTATGATTCTTTGAGCCTTGATCAACTCACAAAAATTTTTGATCTCTCTGTTGCTCATACTCATAGCATTGTTAGTAGGATGATGATCAATGAAGAGCTTCATGCAAGCTGGGACCAGCCAACTGGCTGCATTATTTTCCAGGATGTGGAGCACTCTAGGTTGCAGGCATTGGCATTCCAGTTAACAGAGAAGTTATCCATCCTTGCCGAGAGTAATGAAAGAGCAATGGAGGCAACGATAGGTGGTGGTGGATTGGATCTTCCTATGAGGCGTAGGGATGGCCAGGATTATGCTGCTGCTGCTGCTGGTGGAAACAACACTGGGAGTGGCAGGTGGCAGGACTTGGGTTCTCAGACAAGACAAGGTGGTGGGCGATATGGTAGTGGAGGTGGAAGGCCATTGGCTTTAGGCCAAGCAGGTGGGGTTGGATATTCAAGGGACCGAGCAGGACGTGGATCTGGTCGGTATCAAGATTCTGCATATGGAGGTTCAGGCAGGACTCAAGGTGGTTCCTCATTGAGGGGACCGCATGGTGATGTATCATCGCGCATGGTTAGCCTCAAGGGTGTGCGTGCTTAA 891 0.4725 MLLEVPNMAANVHDAKRKVISKNFRRLLEVSDKQTFTGPPENVRDHVMAATRALTKGDFNKAYDIIVSLDVWKFVRNRDTVLAMLKDKIKEEALRTYLFTFSSSYDSLSLDQLTKIFDLSVAHTHSIVSRMMINEELHASWDQPTGCIIFQDVEHSRLQALAFQLTEKLSILAESNERAMEATIGGGGLDLPMRRRDGQDYAAAAAGGNNTGSGRWQDLGSQTRQGGGRYGSGGGRPLALGQAGGVGYSRDRAGRGSGRYQDSAYGGSGRTQGGSSLRGPHGDVSSRMVSLKGVRA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01301 296 MobiDBLite consensus disorder prediction 210 228 - -
Aip05g01301 296 SUPERFAMILY "Winged helix" DNA-binding domain 79 154 IPR036390 -
Aip05g01301 296 ProSiteProfiles PCI domain profile. 1 155 IPR000717 -
Aip05g01301 296 Pfam PCI domain 23 151 IPR000717 -
Aip05g01301 296 SMART PINT_4 84 172 IPR000717 -
Aip05g01301 296 MobiDBLite consensus disorder prediction 264 279 - -
Aip05g01301 296 MobiDBLite consensus disorder prediction 203 296 - -
Aip05g01301 296 Gene3D - 89 159 IPR036388 -
Aip05g01301 296 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 295 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aip05g01301 296 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 295 - -
Aip05g01301 296 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 84 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01301 Aip-Chr5 19057628 19058518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01301 1 296 Eukaryotic Initiation Factors Gene Family AT3G56150 64.333 3.56e-107 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01301 K03252 - ccaj:109797232 464.922