Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01277 ATGAGTACTGTTGGATATAGGTCAGATGATGAATGCTCTTATGTTGGAGGAAAAGGAGAAATCGGGTTTCTAGATTTTGAGGAAGAGAAATCTGTTTGTAGTTACGCTGCTATTGATGATGGCGATCCGGTTATCATATCCGTCCCATTTGCATTTGTGAATGGGAAGCCTCAATCAGTGTTTGTTGGAGATACTGCTGTGGATTTAATAACCATCAATAATACCACCAAAGAGCCTGTGCAGTTGTGGACTGTTCATATTTTTGCCTCAAATCCTCAGAACACTTTCACTCTTTCTCTGATGGAACCTCCATCAGCAAATTCAAATTCAAATGGAGATTCAGATGAGGGCTTTCTCGAATCATTTGGATTGGAGGATAGAATGCTTCAGCCTGGTGAGATTTTAAAAATATGGTTGTCTTGCAAGACAAAAGAAATGGGCATGTACCAATCAATTGTGCATTTTGATGTTGGAGAAGAAAGAATAGAAAGGGTGGTTTTTGTCTTAGTTGAAGACAAGATTTCGAAATCGTTGGCTTCTAAGAGGCCTTATTCTCGACAAAGAAGAAAAGACAAATTTGCAGTAGATAATTTCATTGCAGGCTCACGTCCTGCAGGGAAAACAAATCGGGCCTACATTAATAGGCTTCCAAAATATGATATTCCTGGGGATATTAGAAACTTGCTTGAGAGCAATCAGATCCCTGAAGCTGTTGAAGGTGGTCTAACAAGAAAGAATTATGCTTCTTTTTTCAAAACGTTGGTGATAATGGAAGAAATACAATTAGAGGAAGACATGAGGACTTATGACATGGAATGCGTAACAATGAGGAAGAGACCCAATCAATTTTTGTCCATGTTGGTTCCTGGGCTTGCTGAGAGAAGACCATCACTGGTTCATGGGGATTTCATCTTTGCCAAACTAGCATCTGAAAATGATAAGAACACTGGACGCCCTTATCAGGGATTTATCCATCGTGTTGAAGCTGATGAGATCTTTTTGAAGTTTGATAATGAATTTCACCTGCGTCATAGAGATGGAAATCTTTATGATGTTCACTTCACCTACAATAGGATCAATATGAGAAGGTTGTATCAAGCAGTTGAGGCAGCCAGTGGCTTAGGATCCGAGTTCCTTTTTCCATCTACTTTAGCCAGGAAGAGGTTCATTGAAACCACTGATCTGATTCCCATATCTGGTACTTTTAATGATGAGCAAATTTCTTCAATCAAAAGTATTCTTGGTTGCAAAGGGGCGCCACCATATCTGATTTATGGGCCTCCAGGTACGGGAAAGACTAAGACAATAGTAGAAGCAGTTCTCCAGCTCTACAAACATAATAAGAATGCCCGCATTCTTGTCTGTGCACCATCAAATAGTGCAGCAGACCACATATTAGAGAAACTGCTTGCTGAGAAGTCTGTTGAGTTTCAAGAAAATGAAATATTCAGGCTCAATGCTTCTACCAGGCCATATGAGGATATCAAACCTGAAATTATCCGTTTCTGCTTCTTTGATGAGTTGATATTTAAGTGCCCGCCAGTCAGTGCCCTCAGGCATTATAGGATTATAATATCAACATATATGAGTGCCTGTCTTCTTTATGCAGAAGATGTTTCACGGGGTCATTTCTCTCACATTTTCTTGGATGAGGCTGGCCAAGCCTCAGAACCTGAAACCATGATCCCTATATCCCATCTCTGCAGAAGGGAAACTGTTGTTGTTCTAGCTGGAGACCCAATGCAGTTGGGTCCAGTAATTTATTCGAAGAAAGCAGATACACATGGATTGGGGACATCATACCTGGCACGACTGTTTCAATGTGAGATGTATGCAACTGGAGATGCAAATTATGCAACGACATTGGTTAATAATTATCGATGCCATCCAGAGATATTACATCTCCCTTCAAAGCTGTTTTATAATGGGGCGTTGATTGCATGCAGAGACAAGACAACCTTCATGGTGAGTCCTGGCTTCCTCCCTAATGAGGAGTTTCCCATTCTTTTCTTTGGCATCCAAGGATGTGATGAAAGAGAAGGGAATAACCCCTCATGGTTCAACCGAATTGAAGTGAGCAAAGTTGTCGAAGTTGTCAAGAGGCTGACAGCTGGTGGGAATATAATGGAGGAACACATTGGCATAATAGCACCATATAGGCAACAAGTACTCAAAATTAAACAGACTCTTGAAAATCAAGAGATGCCTGATATCAAAGTTGGTAGTGTTGAACAGTTTCAAGGACAAGAGAAGGAAGTTATTATCATATCAACTGTTCGATCAACCATCAAACACAATGAGTTTGACAGAGTCCACTGTCTTGGCTTTTTGAGCAATCATAGAAGGTTTAATGTGGCTGTAACTCGTGCCATATCATTGTTGGTTATCATCGGGAATCCACACATTATTTGCAAGGACAATTATTGGAGCCAAATGCTGTGGCACTGCGTAGACAATTCATCTTATCAGGGTTGTACACATCCTGATAAGCCAAAACCTTATGTTGAGGACGCTGGAGACAACAATGTGAAGCCTTATGGAGAGGTCAATGGAGAGGACTCTGTAGAATGGGGTCAAGATTTATCCCAGGTGGAGATTCCCAAACCTGTTACTGATGAGGCTGAATGGTCTGATGGCTGGAGAAGTAGTTGA 2652 0.4091 MSTVGYRSDDECSYVGGKGEIGFLDFEEEKSVCSYAAIDDGDPVIISVPFAFVNGKPQSVFVGDTAVDLITINNTTKEPVQLWTVHIFASNPQNTFTLSLMEPPSANSNSNGDSDEGFLESFGLEDRMLQPGEILKIWLSCKTKEMGMYQSIVHFDVGEERIERVVFVLVEDKISKSLASKRPYSRQRRKDKFAVDNFIAGSRPAGKTNRAYINRLPKYDIPGDIRNLLESNQIPEAVEGGLTRKNYASFFKTLVIMEEIQLEEDMRTYDMECVTMRKRPNQFLSMLVPGLAERRPSLVHGDFIFAKLASENDKNTGRPYQGFIHRVEADEIFLKFDNEFHLRHRDGNLYDVHFTYNRINMRRLYQAVEAASGLGSEFLFPSTLARKRFIETTDLIPISGTFNDEQISSIKSILGCKGAPPYLIYGPPGTGKTKTIVEAVLQLYKHNKNARILVCAPSNSAADHILEKLLAEKSVEFQENEIFRLNASTRPYEDIKPEIIRFCFFDELIFKCPPVSALRHYRIIISTYMSACLLYAEDVSRGHFSHIFLDEAGQASEPETMIPISHLCRRETVVVLAGDPMQLGPVIYSKKADTHGLGTSYLARLFQCEMYATGDANYATTLVNNYRCHPEILHLPSKLFYNGALIACRDKTTFMVSPGFLPNEEFPILFFGIQGCDEREGNNPSWFNRIEVSKVVEVVKRLTAGGNIMEEHIGIIAPYRQQVLKIKQTLENQEMPDIKVGSVEQFQGQEKEVIIISTVRSTIKHNEFDRVHCLGFLSNHRRFNVAVTRAISLLVIIGNPHIICKDNYWSQMLWHCVDNSSYQGCTHPDKPKPYVEDAGDNNVKPYGEVNGEDSVEWGQDLSQVEIPKPVTDEAEWSDGWRSS 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01277 883 CDD DEXXQc_Helz-like 403 627 - -
Aip05g01277 883 Gene3D - 627 828 IPR027417 -
Aip05g01277 883 MobiDBLite consensus disorder prediction 833 883 - -
Aip05g01277 883 PANTHER RNA HELICASE SDE3-RELATED 8 837 - -
Aip05g01277 883 CDD SF1_C_Upf1 628 816 IPR041679 -
Aip05g01277 883 Pfam AAA domain 402 496 IPR041677 GO:0004386
Aip05g01277 883 Pfam AAA domain 517 590 IPR041677 GO:0004386
Aip05g01277 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 812 IPR027417 -
Aip05g01277 883 PANTHER DNA2/NAM7 HELICASE FAMILY 8 837 IPR045055 -
Aip05g01277 883 Pfam AAA domain 599 800 IPR041679 -
Aip05g01277 883 Gene3D - 331 613 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01277 Aip-Chr5 18670205 18674882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01277 401 558 Core DNA Replication Machinery Family AT1G08840 29.630 1.43e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01277 K18422 - gmx:100801796 1396.72