Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01254 ATGATAGTGTCTCAGAGTTGGTCCTTCAATTTTCCAACCATTACAATTTACAACTTTCTATCTTCCACCACCACTTCACTTACATTGATCAAAGTGATGATGGGAAGAACAGGAAGCAGTGATGAAAGTGGATTGAAGAAGGGGCCATGGACACCAGAAGAGGACAAGATATTGGTTGATTACATTCAGAGACATGGCCATGGAAGTTGGAGAGCCCTTCCAAAGCTTGCTGGATTGAACAGATGCGGCAAGAGTTGCAGATTAAGGTGGACTAATTACCTCAGACCTGATATCAAACGTGGAAAGTTCTCTGATGAAGAAGAACAACTCATCATCAACTTGCATGCAGTTCTTGGCAACAAGTGGGCAGCAATAGCAAGTCATTTGCCAGGGAGAACAGATAATGAAATAAAGAATTTCTGGAACACACATTTGAAAAAGAAGCTTCTTCAAATGGGATTAGATCCAATGACACACCGTCCAAGAACAGATCACCTTAATCTCCTTACCAATCTGCAACACATTCTTGCTGCTGCTAACATTGTCACCACTTTCACAAACCCTAATCATCAAATCAACACTGCTCTAAGCCTTCAAAACATGCTTCAACCCATGCCTCCTGCACCCTCAAATTTACTCAATAATCTTGGATCATCTTTCTCATCATTATCACTGCCAGATACTCTTCTTTATGAAGGTTTAGGGTTGAATGTAAATGACCATTCTACCCTTCATAACATTATTTATAATGCTTCAAATTCAGCTGCTTCTTCCTCTCAGAATCAGTTCCAAAACTTTGATCAACAACAGATGATGATGACGATGATGAATGGTAGCAGAAACAATAATAATAGCAGTAATTGCAGTGAGTCTCAGAATTTTGACGAACAATTTGGTTCAACAAATGCTACTACTACAGTCACACCATCAAGTTCACTTCCAAATCTGGTTTCAGTTTCAGCCTCACCTGAACGTTCTTCTTCTTCTCCAACCAAGAATAATAATAATAATATTATTAACAGTAATTCCACCTTTGAAATTTGGGGAGATTTCATGGATGTGGATCCAAATGATGCGTATTGGAAAGATTTCATTGACCAACAATCTAACCAGCCATGGTCGACAGTCCAATGA 1134 0.3915 MIVSQSWSFNFPTITIYNFLSSTTTSLTLIKVMMGRTGSSDESGLKKGPWTPEEDKILVDYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHAVLGNKWAAIASHLPGRTDNEIKNFWNTHLKKKLLQMGLDPMTHRPRTDHLNLLTNLQHILAAANIVTTFTNPNHQINTALSLQNMLQPMPPAPSNLLNNLGSSFSSLSLPDTLLYEGLGLNVNDHSTLHNIIYNASNSAASSSQNQFQNFDQQQMMMTMMNGSRNNNNSSNCSESQNFDEQFGSTNATTTVTPSSSLPNLVSVSASPERSSSSPTKNNNNNIINSNSTFEIWGDFMDVDPNDAYWKDFIDQQSNQPWSTVQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01254 377 Pfam Myb-like DNA-binding domain 100 145 IPR001005 -
Aip05g01254 377 Pfam Myb-like DNA-binding domain 47 94 IPR001005 -
Aip05g01254 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Aip05g01254 377 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Aip05g01254 377 PANTHER MYB TRANSCRIPTION FACTOR 36 368 - -
Aip05g01254 377 SUPERFAMILY Homeodomain-like 44 141 IPR009057 -
Aip05g01254 377 Gene3D - 46 99 - -
Aip05g01254 377 MobiDBLite consensus disorder prediction 276 340 - -
Aip05g01254 377 Gene3D - 102 149 - -
Aip05g01254 377 SMART sant 99 147 IPR001005 -
Aip05g01254 377 SMART sant 46 96 IPR001005 -
Aip05g01254 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 94 IPR017930 -
Aip05g01254 377 ProSiteProfiles Myb-like domain profile. 42 94 IPR001005 -
Aip05g01254 377 CDD SANT 49 94 IPR001005 -
Aip05g01254 377 CDD SANT 102 145 IPR001005 -
Aip05g01254 377 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 36 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01254 Aip-Chr5 18267027 18269589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01254 34 366 MYB Transcription Factor Family AT5G16770 46.667 3.87e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip05g01254 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01254 K09422 - gmx:547488 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01254 05 18267027 18269589 Aip05g01254 05 18267027 18269589 ECH