Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01232 ATGAGATCTGCTGTATTGGATACTATTTTGGAAGGAAAGGATGAGGTTAACCTCACAGTTAGTGATTCTACTACCTTTGGTTTGTCATCCGAATCACGTTCTGAAAAAGCGGAAGCTATGCCAGATGTATTGCCTGAAAATGATATCCAAGCTGGTAAAAATGTGACAGATTTCAGTCTAACATCTGCTGCATTGGATACTAATTTGAAGGGAAAGACAAAATTAGGGGAGTCTAAAATGGCAGTTAAGGATGCAATGAATGTTGGCTCGTCAACTGTATCAGATCCCCACAAAGCTGAAGTGATGCCAAATGTATTGCCTGAAAATAAGATATATGCTGATGAAAATTTGACAGGCCTTTCAGTTGAGGAAGCTATTGGAAAGGATTTACTTATGCTGGTTGAGGATTTTTCAGCAGAGAGAGTCAAGAAGATGCTGGACATGGCACTGCAGGCATTCTCTCTCATAAGCAGGGCTAGCTATGAAAATGTTGCCAAGAAATGGATTCCTGAGTTGAGGCATGTTCCAATTATTCTTGTTGGAACAAAACTTGATCTTCGGGATGATAAGCAGTTTTTTCAAGATCATCCTGGTGCAGCGCTTATCACCACAGTGCAGAATGTGAAGGCTGTTTTTGATGCGGCCATCAAAGTAGTTCTCCAGCCTCCAAAGCAGAAGAAAAAGAAGAGAAAGGGTCAAAAAATATGTTCCATATTCATAACACATGATGGTGTTGGTGTTCCGCAAACATTACTGAACCAAATGTTCGGACGAGAGGGACAAGAATTCGAGGAGGGTATTAGTCTGCTCATCAGCAGAAAGTTGCTGAAGCTGATGAATGGAGACGTGCGGTATCTGAGGGAAGCTGGCAAATCATTTTTCATCTTAACAGTTGAACTGGCTGCTTCCCAGAAATTGATTGCTTAA 927 0.4121 MRSAVLDTILEGKDEVNLTVSDSTTFGLSSESRSEKAEAMPDVLPENDIQAGKNVTDFSLTSAALDTNLKGKTKLGESKMAVKDAMNVGSSTVSDPHKAEVMPNVLPENKIYADENLTGLSVEEAIGKDLLMLVEDFSAERVKKMLDMALQAFSLISRASYENVAKKWIPELRHVPIILVGTKLDLRDDKQFFQDHPGAALITTVQNVKAVFDAAIKVVLQPPKQKKKKRKGQKICSIFITHDGVGVPQTLLNQMFGREGQEFEEGISLLISRKLLKLMNGDVRYLREAGKSFFILTVELAASQKLIA 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01232 308 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 144 206 - -
Aip05g01232 308 SMART rho_sub_3 125 222 IPR001806 GO:0003924|GO:0005525
Aip05g01232 308 PANTHER RHO FAMILY GTPASE 144 206 IPR003578 GO:0005525|GO:0007264
Aip05g01232 308 PANTHER RHO FAMILY GTPASE 204 238 IPR003578 GO:0005525|GO:0007264
Aip05g01232 308 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 215 300 IPR003594 -
Aip05g01232 308 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 204 238 - -
Aip05g01232 308 Pfam Ras family 147 192 IPR001806 GO:0003924|GO:0005525
Aip05g01232 308 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 231 297 IPR036890 -
Aip05g01232 308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 227 IPR027417 -
Aip05g01232 308 ProSiteProfiles PAS repeat profile. 115 153 IPR000014 -
Aip05g01232 308 Gene3D - 70 225 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01232 Aip-Chr5 18045711 18054838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01232 238 305 Histidine Kinase Gene Family AT1G09570 66.176 9.05e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01232 K04392 - adu:107482315 193.741