Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01221 ATGGTGTATCTTTCAACTTCCAAGATTAGTTTAGTGCTTCTTCTCAACATGGGTTTGGTCATTATGTGTATTCTATGGCAGTTAACGAAGAAGGTTTTCCTGGGTTCTCCTCGGGAAGCCGAGGTAGAAAGGCTTAACGAGCAATCATGGAGGGAGATTATGGAAATCCTCTTCGCCATTACTATTTTTAGGCAGGATTTCTCTTTTACATTCCTTGCGATGGTCACAGCATTGCTGTTGATTAAAGCTTTGCATTGCGTATCCTTATACAGTTCTCTGAAGCATCTGTTTCAAACATGGCAACCGTCTGTTTCAATATTCTTTTCTTTTGAGTACATGATACTTGCAACTACAACAGTGTCAGTTTTTGTAAAATATCTTTTCTATATCAGTAACATGCTCATGGAAGGACAATGGGAAAGGAAACCAATCTTCACATTCTACTTGGAACTTATCAGGGACTTGCTTCACTTGTCTATGTATCTTTTCTTCTTCCTTGTAATTTTTATAAACTACGGTGTTCCTCTGCACTTAATACGGGTGCTTTACGAGACATTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATCCGATATTGTAAGATCACTTCAAATATGAAGGACCGTTTTCCAGAGGCAACCCCTGAAGAGCATAATGCAAGTGATGCAACCTGCATTATCTGTCGTGAAGAGATGACTACTGCCAAGAAACTTATATGTGGACATCTGTTTCATGTTCATTGCCTCCGATCATGGCTGGAGCGGCAACATACTTGCTCTACCTGCAGAGCCCTGGTTGTTCCACCCGAAAATGGGGCAACTGCAACTGGAGGCCAGCAAGGAGCACAATCAGATGCTCATCGACAGGGAACAGGGACTAGCACTGGAAGCTCAGCTCAAAATGAGGTTGGCGGTGGTGGGGCAATTGATAATTTGAGTCGCCATCAAGCCAGACGTCAAGCTGCTGCTGCTGCTGTTTCAATATACGAGAATTCTTATGTTTACCCCTCCACATCATCTTTAGTATGTGTTGTCTAA 1038 0.4229 MVYLSTSKISLVLLLNMGLVIMCILWQLTKKVFLGSPREAEVERLNEQSWREIMEILFAITIFRQDFSFTFLAMVTALLLIKALHCVSLYSSLKHLFQTWQPSVSIFFSFEYMILATTTVSVFVKYLFYISNMLMEGQWERKPIFTFYLELIRDLLHLSMYLFFFLVIFINYGVPLHLIRVLYETFRNFKVRVADYIRYCKITSNMKDRFPEATPEEHNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCSTCRALVVPPENGATATGGQQGAQSDAHRQGTGTSTGSSAQNEVGGGGAIDNLSRHQARRQAAAAAVSIYENSYVYPSTSSLVCVV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01221 345 MobiDBLite consensus disorder prediction 273 304 - -
Aip05g01221 345 CDD RING-H2_synoviolin 222 263 - -
Aip05g01221 345 MobiDBLite consensus disorder prediction 273 310 - -
Aip05g01221 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 270 IPR013083 -
Aip05g01221 345 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE HRD1B-LIKE 1 86 - -
Aip05g01221 345 ProSiteProfiles Zinc finger RING-type profile. 225 263 IPR001841 -
Aip05g01221 345 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE HRD1B-LIKE 88 343 - -
Aip05g01221 345 SUPERFAMILY RING/U-box 205 269 - -
Aip05g01221 345 Pfam Ring finger domain 224 263 IPR001841 -
Aip05g01221 345 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 86 - -
Aip05g01221 345 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 88 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01221 Aip-Chr5 17927409 17930926 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01221 2 341 C3H Transcription Factor Family AT3G16090 64.380 1.55e-169 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01221 K10601 - gmx:100816441 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01221 05 17927409 17930926 Aip05g01221 05 17927409 17930926 ECH