Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01187 ATGGAAAATCCAACTAGCAGCACCATGCAAGAATGTAACAATGATAATGTGATGGTGCCGCAGTCTTACAGGGGAGTTCGTAAGAGAAAATGGGGCAAATGGGTGTCCGAAATTCGCGAACCGGGGAAGAAAACCAGAATATGGCTAGGGAGCTATGAGCTACCTGAAATGGCGGCTGCAGCCTACGATGTGGCGGCATTGCACCTTAGAGGCCGCTCTGCCAGGCTCAACTTCCCGGAGTTGGTGGAGACTATGCCCCGGCCGGTGAGTTCAAGGGCCGAGGACGTGCAAGCCGCGGCTCAGCAAGCTGCATTAAGATTCAAGAGTTCTACAGAGGTAGATAGTGCCCCTGATAACAACAAGGGCACTATCCTTCCCGTAAGGATAGGATTGTCTCCTAGTCAGATTCAGGCGATTAATGAATCTCCATTAGACTCGCCAAAAATGTGGATGCGAATGGCTACTGAAGCATTCATGTTTGGCTTCCATGATCATAATTATCATCATGATTATTGTGATTATGATTATGGTATGTTAGAGTTAAGCGAATGGGAAGAAATTCAGCATGAATCTTTATGGGATTCATGA 588 0.4711 MENPTSSTMQECNNDNVMVPQSYRGVRKRKWGKWVSEIREPGKKTRIWLGSYELPEMAAAAYDVAALHLRGRSARLNFPELVETMPRPVSSRAEDVQAAAQQAALRFKSSTEVDSAPDNNKGTILPVRIGLSPSQIQAINESPLDSPKMWMRMATEAFMFGFHDHNYHHDYCDYDYGMLELSEWEEIQHESLWDS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01187 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 163 - -
Aip05g01187 195 Pfam AP2 domain 23 71 IPR001471 GO:0003700|GO:0006355
Aip05g01187 195 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Aip05g01187 195 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Aip05g01187 195 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Aip05g01187 195 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Aip05g01187 195 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Aip05g01187 195 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Aip05g01187 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 10 163 - -
Aip05g01187 195 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01187 Aip-Chr5 17224116 17224984 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01187 6 194 AP2-EREBP Transcription Factor Family AT1G71450 47.179 4.00e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip05g01187 AP2 5.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01187 - - gmx:100788567 239.195