Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01175 ATGAGTCGCAGTTCGTGGTTGCATGTAAATAACTCTGCATCATCATCATCAACCACTAACAATAATAAGAAGCTCAAGGGTGTTAGGCGTCGAAAGTGGGGCAAGTGGGTTTCGGAGATTCGTGTTCCGGGCACCCAAGAGCGTCTCTGGTTGGGAACCTACGCCACGCCGGAAGCAGCTGCGGTGGCTCACGACGTCGCCGTTTATTGCCTGAAGAAACCTTCTTCATTGGAGAAGCTTAACTTCCCTGACACCTTGTCTTCTTATCATCACTGTCTTCAGCAGAGAGAGGATTTGTCACCAAGGTCCGTTCAGAAGGTCGCTTCAGATGTTGCCATGGATGTTGATGCGCGCAACATTAATGGGAGATCAACAACGCTCACTACCACCACCAGTACTGTTGCAGTAACAGAAACTAGTAGTGGTAGTTATTGTTCCGACGTGTTACCTGAAACTGGCGCAGGTATGAACAGTTATGATGTTGGATTTGGAGGAGATTCTTGGTGGCAAGGTTTGGGTGATGGTAATGGTGAAACAACTTTCCAAGAAAGTAGTAGTGAAGATCATCATCATGGTGGTGGACAAGGAGATCAGCCATTGAGCATTTCTGTTGAAGATTATCTTTAG 627 0.4689 MSRSSWLHVNNSASSSSTTNNNKKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLKKPSSLEKLNFPDTLSSYHHCLQQREDLSPRSVQKVASDVAMDVDARNINGRSTTLTTTTSTVAVTETSSGSYCSDVLPETGAGMNSYDVGFGGDSWWQGLGDGNGETTFQESSSEDHHHGGGQGDQPLSISVEDYL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01175 208 SMART rav1_2 24 89 IPR001471 GO:0003700|GO:0006355
Aip05g01175 208 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Aip05g01175 208 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Aip05g01175 208 Gene3D AP2/ERF domain 24 84 IPR036955 GO:0003700|GO:0006355
Aip05g01175 208 CDD AP2 23 58 IPR001471 GO:0003700|GO:0006355
Aip05g01175 208 MobiDBLite consensus disorder prediction 172 208 - -
Aip05g01175 208 SUPERFAMILY DNA-binding domain 24 84 IPR016177 GO:0003677
Aip05g01175 208 MobiDBLite consensus disorder prediction 1 28 - -
Aip05g01175 208 MobiDBLite consensus disorder prediction 1 23 - -
Aip05g01175 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 130 - -
Aip05g01175 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 11 130 - -
Aip05g01175 208 Pfam AP2 domain 24 72 IPR001471 GO:0003700|GO:0006355
Aip05g01175 208 ProSiteProfiles AP2/ERF domain profile. 24 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01175 Aip-Chr5 17036527 17037248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01175 21 117 AP2-EREBP Transcription Factor Family AT1G71520 59.596 4.51e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip05g01175 AP2 1.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01175 - - adu:107488358 352.443