Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01146 ATGGCTAACTTGCTAATAACTTTGTTCTTAATTTCCATTATTGAACTCTTGTTTCTTCCTAACGCAACAAGAAGCAAAACAACTTCACCAGCTTGTGGAAGCAGATATTGTGGAAGCTCTGAAGTAGCTATTGAGTTCCCTTTCCATTTGACACAGGATCATACTAGCTTTGTTGGAGGAGATGCACGATGCGGGTACCAAGGTTTTGAAGTTTCGTGTAACCAAAGGAATTTGATGATTAGTCTCCCAAATGGAGGAGGAGAATTCATCGTCAAAAACATCTCTCTAGAGCACCAATATATTTGGGTCAACGACCCTAATGAGTGTTTTGCTAAACGGTTCTTGCAGGGCAAGGATCTCATCAAAGATTCACCCTTCCTATGGGGCCTTCCAAATTCAAAGAGAGTGATGTTTTACAATTGCAGCGAATTAGCAGGAATTGATGTTGATCCACAACTACGTCTTCCTTGCCTGAGTGACGATGAGAAGCATTATTATTCTGTTATAGTTTTGTCAGAGTCGGATATTGAGAATGAGAATTATTATAGTTCAAAGTGTAGGAATATTGGGTCTGCTTTGTTTCCCGTTAATGATGTTTCTGAAGATGATTCTTCAATATCATCACGGCAAATAAGAGATGAACTTATTCATTTTGATATGAAGTTGCAATGGTTTAGGCCTAGTTGTTATTGTAAGGAGGATCAACACTGTGGCTTCATACCAAATGCTGATTTTGACGTTGTTTGTTACAACCACAAAAATCAAGAACAAGATATGTTACTTGAACTTGACAGCGGTTATTCCAATAATAATGGTAATGGGCACATGCAAGCACTTTCCGGTACTAGTGGAAGTCCTCCAAGTTATTATTATGGTGAAAAGGAAGAGAGCAAGTTTGCTATAGCATTGGGAACGCTAGGTATATTAATATTATTATTTTATGTAGCATTTCATATAACTAAGGAGATGAGACAAGAAAGGTTACGACAGAGAATCATCGAGACCCAACATGCGCGAGCAAGGAGAATGTTGTTAAGCCAACAGCGACAGCTAGGAGAGCTACGCAGATTAAGAATGATGGAATCATCATCAATCATCAGTGAGAGGTACCCTCCCACCAGCGATGAGAATTCAACAATAATAATAGAGTTAGAACAATGTCCAGTTATCCAGCTAGGTGACAGTGGACAATTGCCAACAATGTCAATGGACAACGTTTGTTCTATATGTCTTAGTGAGTACGAGGCTAAAGAAACATTAAGGAGCATGCCACAGTGTAATCACTTTTTTCATTCTCATTGTATTGATCCCTGGCTCAAGATGAATGCTACTTGTCCCTTGTGCCGAAAATTGCCAATATGA 1362 0.3899 MANLLITLFLISIIELLFLPNATRSKTTSPACGSRYCGSSEVAIEFPFHLTQDHTSFVGGDARCGYQGFEVSCNQRNLMISLPNGGGEFIVKNISLEHQYIWVNDPNECFAKRFLQGKDLIKDSPFLWGLPNSKRVMFYNCSELAGIDVDPQLRLPCLSDDEKHYYSVIVLSESDIENENYYSSKCRNIGSALFPVNDVSEDDSSISSRQIRDELIHFDMKLQWFRPSCYCKEDQHCGFIPNADFDVVCYNHKNQEQDMLLELDSGYSNNNGNGHMQALSGTSGSPPSYYYGEKEESKFAIALGTLGILILLFYVAFHITKEMRQERLRQRIIETQHARARRMLLSQQRQLGELRRLRMMESSSIISERYPPTSDENSTIIIELEQCPVIQLGDSGQLPTMSMDNVCSICLSEYEAKETLRSMPQCNHFFHSHCIDPWLKMNATCPLCRKLPI 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01146 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 452 IPR013083 -
Aip05g01146 453 ProSiteProfiles Zinc finger RING-type profile. 407 449 IPR001841 -
Aip05g01146 453 SMART ring_2 407 448 IPR001841 -
Aip05g01146 453 CDD RING-H2_PA-TM-RING 406 449 - -
Aip05g01146 453 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 8 450 - -
Aip05g01146 453 Pfam Ring finger domain 406 449 IPR001841 -
Aip05g01146 453 Pfam Wall-associated receptor kinase galacturonan-binding 32 105 IPR025287 GO:0030247
Aip05g01146 453 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 450 - -
Aip05g01146 453 SUPERFAMILY RING/U-box 406 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01146 Aip-Chr5 16679319 16681868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01146 32 452 C3H Transcription Factor Family AT2G25410 28.000 6.04e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01146 - - adu:107488346 857.825