Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01145 ATGACCACCCCGCAATATTATTCCCTAACACTTGTATTCTTGATTATTATTATTATTATTGAGCTCAGAAGAACAGAGGCGGATGAACCAAGTGATAATATTAATAACTGTGACACAACCGTTATTGCCTCATGCGGAAACTACACGCTCCCTATTGAATTCCCGTTTTGGATGACCAGTGAAGGCAACAACACACGGTGTGGGTACCGAGGTTTCGAAATCAAGTGTAACAATCAGAAACAACCGTTGCTAAATCTCCCAGAATCCGGTGACTTCGTTGTAAACGGGATCGAGAATGATGAGCAAACAATTCTGATCAACGACCAAGAAAAGTGCCTCCCAAGAAGGATCATGCTCAACCGTGGATTCAGCCTCGCAGATTCCCCTTTCCAATTAGCCGACGGTTTCAGTTACCAGAATTACTCGTTTTACAGCTGTCCATACGACCCAACATCACCGCTCATGATAGAGTGCTTGGGATCCACGCGCAACAACCTCAGCTATTCCGTGTTGGCGGTGTTGTCGTCGCAAGTAACCCGTCAAAGGTTGTTGAATAATTCATCGTCGTGCCACTTTATTACATCGGCTTTGGCACCTGTTCCCTTTTATGTACGGTATGAAGTGTTTTGGATGAGTTACGATGTTGATATACGGTTACGGTGGAATGAACCTGATTGCACGTCTTGTATACAAAGTGGTGGACGCTGTGGCCTCCTACCGAATTCTAACGATGATCATGCTGCTTGTTATGATCTTCCACGCCAAGGTCAAGGTCTTTCGAGGAAAGCCAGGTTTGGTCTAACCGTAGGCGTGGGAATACCTGGAGTCATTGGCATCATTGGACTAATATGTTTATTGCAACGCAGAAAGATGAGGCGAGATCAGCGACAACAGTCATCAAGAACACAAACGGAATTTTCTATCATGATTGTTCCTCCCCCTCCAGCTGTCCTAATGGGCCTTGATGGGCCATCAATAGAAAGATATCCGAAAACTGAGGTAGGTGAGGATGGGCAATTGCCTAGGCCCAATGATACCATTTGCTCAATATGTCTCTGTGAATATAGGCCCAAAGAGGTGCTGAGGACCATAACAGAGTGTCAACACTATTTTCACGTTGATTGCATTGATGGGTGGCTGAAGATGAATGCTACTTGCCCTTTGTGTAGAAAATTGCCAGCAAGATCAAATTCCAATTACGACTCCTCTTTGCCTTTCTCTCCATCTTCCTCCTAA 1236 0.449 MTTPQYYSLTLVFLIIIIIIELRRTEADEPSDNINNCDTTVIASCGNYTLPIEFPFWMTSEGNNTRCGYRGFEIKCNNQKQPLLNLPESGDFVVNGIENDEQTILINDQEKCLPRRIMLNRGFSLADSPFQLADGFSYQNYSFYSCPYDPTSPLMIECLGSTRNNLSYSVLAVLSSQVTRQRLLNNSSSCHFITSALAPVPFYVRYEVFWMSYDVDIRLRWNEPDCTSCIQSGGRCGLLPNSNDDHAACYDLPRQGQGLSRKARFGLTVGVGIPGVIGIIGLICLLQRRKMRRDQRQQSSRTQTEFSIMIVPPPPAVLMGLDGPSIERYPKTEVGEDGQLPRPNDTICSICLCEYRPKEVLRTITECQHYFHVDCIDGWLKMNATCPLCRKLPARSNSNYDSSLPFSPSSS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01145 411 SMART ring_2 348 389 IPR001841 -
Aip05g01145 411 Pfam Ring finger domain 347 390 IPR001841 -
Aip05g01145 411 SUPERFAMILY RING/U-box 342 393 - -
Aip05g01145 411 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 27 410 - -
Aip05g01145 411 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 27 410 - -
Aip05g01145 411 ProSiteProfiles Zinc finger RING-type profile. 348 390 IPR001841 -
Aip05g01145 411 Pfam Wall-associated receptor kinase galacturonan-binding 44 108 IPR025287 GO:0030247
Aip05g01145 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 394 IPR013083 -
Aip05g01145 411 CDD RING-H2_PA-TM-RING 348 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01145 Aip-Chr5 16666738 16669026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01145 44 394 C3H Transcription Factor Family AT2G25410 31.944 1.65e-49 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01145 - - adu:107488400 754.592