Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01119 ATGCCTGCGCCTCCTCCTAACTACACTCACCACCGCACCAAACTCGTCAGGATAACAGTTACTGACGCTGATGCCACCGACTCCTCCAGCGACGAAGCACAGCTCTCATCCTCCACGCGCCACCACCGACACAGAAAGCTCGTCAACGAGATTCTTATCGAGCCCTGTCAAGTGCCTTCCCGGAAGAGAACCAAGAAGTCATCAGCAAGTACCTCCGCCGCCAAGCCCAGAGCTCCGGCCATTCGCCGCCAAATCTCCGGCAGGAAGTTCCGGGGGGTGAGGCAGAGGCCATGGGGGAAATGGGCGGCGGAGATAAGAGACCCTTCACGGCGCGTGAGGTTATGGTTAGGTACCTACGACACCGCGGAGGAAGCTGCCATGGTGTACGACAACGCGGCCATTAAACTGCGTGGACCCGACGCGCTCACCAATTTCATAACGCCGCCACCAACCGCAACGCTGGACAGTAATAATAATAATGAAAATAAAACGGCAGCACCAACGGTTTTGGTAAACGGTTACAGTTCCGGCGATGAGGAGTCTCAAAGCACCAACAACAATCACAGTCAGAGTCACAATCTGTTCTCTCCAACTTCGGTGCTTCATCATCATCATCATCATCATAATCAGTGTTGTTATTCCTTATCGGAGGAAGGTGAATCCGCCGTAACGGGCAAAGAGGATGAATATTCGAGCGTGTCAGAGAATAATAAGGTCAAATCTGAGGAAGACGATTCATCATTCCTTCACATTCCGAGTGATGTGCTCTTTGATTTTCAAGTCTCTTCTTCGCCGTTGGTGGTGCCAGATGTTTTTGAAGAAAGCTTGCTCTTCGCCGATGATTGCGGCGGCGGTGGCGGCGGTTTCCTCACTTCTTGTGAGGACTTTGATTTCGGCTTCAAAAACTGGCACAGAGAGGATGACTTCTTCCAAGATATAACTGATTTATTCCCTTCAGATCCGCTTCTTGCTCTTTGA 978 0.5133 MPAPPPNYTHHRTKLVRITVTDADATDSSSDEAQLSSSTRHHRHRKLVNEILIEPCQVPSRKRTKKSSASTSAAKPRAPAIRRQISGRKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFITPPPTATLDSNNNNENKTAAPTVLVNGYSSGDEESQSTNNNHSQSHNLFSPTSVLHHHHHHHNQCCYSLSEEGESAVTGKEDEYSSVSENNKVKSEEDDSSFLHIPSDVLFDFQVSSSPLVVPDVFEESLLFADDCGGGGGGFLTSCEDFDFGFKNWHREDDFFQDITDLFPSDPLLAL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01119 325 MobiDBLite consensus disorder prediction 58 79 - -
Aip05g01119 325 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Aip05g01119 325 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 12 321 - -
Aip05g01119 325 MobiDBLite consensus disorder prediction 22 44 - -
Aip05g01119 325 MobiDBLite consensus disorder prediction 171 195 - -
Aip05g01119 325 CDD AP2 89 145 IPR001471 GO:0003700|GO:0006355
Aip05g01119 325 SUPERFAMILY DNA-binding domain 89 145 IPR016177 GO:0003677
Aip05g01119 325 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
Aip05g01119 325 Gene3D AP2/ERF domain 88 147 IPR036955 GO:0003700|GO:0006355
Aip05g01119 325 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Aip05g01119 325 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Aip05g01119 325 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Aip05g01119 325 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01119 Aip-Chr5 16112434 16113905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01119 11 325 AP2-EREBP Transcription Factor Family AT4G23750 43.731 1.33e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip05g01119 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01119 - - ahf:112801434 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01119 05 16112434 16113905 Aip03g03076 03 96281752 96283199 PCT