Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01082 ATGGGATTTCCGGTGGGATACACAGAGCTTCTCTTACCGAAGCTGTTCCTCCAAATACTCTCCCTCCTCTCTTTCCTCAGAAAACTCATCTCCGCTCTCTTCCACTACCTCGGCCTCCAACACTTCTTGGAACCCGACACCATCAACCACCACCCTCTCCACCCCCAATTCCAGTCCGTCTCCGCACTCCTCATCAGGGAAATCCTGCCGGTCGTCAGGTTCCAGGAGGTGGCGGAGCCGGCGGAGGAGAGCTGCGCGGTGTGCTTGTACGAGTTCCAAGGGGACGACGAGATCCGACGCCTCAGAAACTGCCGGCACATATTCCACCGGAGATGCCTTGACCGTTGGATGGGATACGAACAGAGGACGTGCCCGTTGTGCCGGACGCCGCTCATACCGTACGATATGCAACCTTGCTTCAATCAGAGGCTCTGGGATGCTTCTGCCATCCCTGAATTCTCCTAG 465 0.5699 MGFPVGYTELLLPKLFLQILSLLSFLRKLISALFHYLGLQHFLEPDTINHHPLHPQFQSVSALLIREILPVVRFQEVAEPAEESCAVCLYEFQGDDEIRRLRNCRHIFHRRCLDRWMGYEQRTCPLCRTPLIPYDMQPCFNQRLWDASAIPEFS 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01082 154 SUPERFAMILY RING/U-box 69 134 - -
Aip05g01082 154 Pfam Ring finger domain 84 128 IPR001841 -
Aip05g01082 154 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 152 - -
Aip05g01082 154 SMART ring_2 85 127 IPR001841 -
Aip05g01082 154 ProSiteProfiles Zinc finger RING-type profile. 85 128 IPR001841 -
Aip05g01082 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 133 IPR013083 -
Aip05g01082 154 PANTHER BRH1 RING FINGER PROTEIN 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01082 Aip-Chr5 15553467 15554288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01082 1 149 C3H Transcription Factor Family AT1G63840 57.792 1.66e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01082 K16281 - fve:101313016 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01082 05 15553467 15554288 Aip03g03161 03 101966439 101966980 PCT