Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01080 ATGTATTCTGATATGCATGGTTTTGATATTTTGTCACACATGTTCAATGAAGAAATCCCAGACCTTATTCTTTTCTCTGATGATCCTCTCCCTCTCTTCACAGCTCAAGAAAACATAATTGATTCTCTTGATCCTTTATCCCTTTCATGCATCAATTTCTCAGAGTCCCAAATGGTGAAGGATCATTGTTCCAACAATCATCAGCACCATCTAAGTCTTCCTCACAGTTACCTGCAGAGGAGCTCCAGTTGCAAATCGTTTGATAGAAAACCAGTTTTTCCACCATGTGAAGCTCACAACGACACTTTGATGGATTCCCCAACTTGTGAGTGGGAAAACGATTTCTTCAAAGGACAAATAAGGAGGGTCTTCAGTGCAGGAGACTTGCAGAACATGCATGCAACTGAAACACTTCAGACGGATGAACGGTACTTGAAGGTGGGGCGTTACAGTCCCCAAGAAAGGAAAGAGAAAATCTCAAAGTACAGGGCCAAGAGAAGCCAGAGGAAGTTCAACAAGACTATCAAGTATGCATGCCGAAAGACACTAGCCGACAATCGAGTCCGCATACGTGGCAGATTCGCACGCAACGACGATACCAGCGTGATTCCAAAAGCCCCATGTTCAACTTCAACTACACAGCAAGACCAAGATGAATTCTGGATTGAAATGATTGAAGCGTTGAATGAGTAG 693 0.4315 MYSDMHGFDILSHMFNEEIPDLILFSDDPLPLFTAQENIIDSLDPLSLSCINFSESQMVKDHCSNNHQHHLSLPHSYLQRSSSCKSFDRKPVFPPCEAHNDTLMDSPTCEWENDFFKGQIRRVFSAGDLQNMHATETLQTDERYLKVGRYSPQERKEKISKYRAKRSQRKFNKTIKYACRKTLADNRVRIRGRFARNDDTSVIPKAPCSTSTTQQDQDEFWIEMIEALNE 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01080 230 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 54 228 IPR045281 GO:0009909
Aip05g01080 230 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Aip05g01080 230 Pfam CCT motif 155 197 IPR010402 GO:0005515
Aip05g01080 230 PANTHER CCT MOTIF FAMILY PROTEIN 54 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01080 Aip-Chr5 15523420 15525152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01080 151 200 C2C2-CO-like Transcription Factor Family AT5G15850 50.000 1.48e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip05g01080 CCT 1.3e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01080 - - adu:107488152 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01080 05 15523420 15525152 Aip03g03162 03 102001037 102002432 PCT