Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01079 ATGGGTGGTTGCTGTTGCTGTTCTTCCAAGGACACTGATTCTGCTCAAAATACCTACTATTACTACCCCAGAGTATCAGAGGAGCATGTTCCGTTATCATCCAATCATGGTGCTGCGTCTGTTTTTGCTGGAGGTCTGTTAGTTGATACTAACCTAGATACTTCAATTCCTGATACTTATACACCACCTCCTGCTCCTGCACCTTTCAATGTTACATTAGGTCCCAATCCAACTCTACCTGTAGCCAGAGAAATTTGTGCTGACAAAACTAATGCATCAGCTGCTGGGGCAAATCATGAGGCCTCGGCTAAGTTGGAAGAGCTGAAGGAATCAGCAGGGCTCAAAGTTCAGACAGACCTAGAACTACGAAAACTGGTAGAACCTATCATTTTAGAGGAAGAGGAGGATGTGTGCCCAATTTGTTTAGAAGAGTATGATGCAGAGAATCCAAAACTCACTACAAAATGTGATCATTATTTCCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGTCCTGTATGTGATCAGGATATGGTTTTGGACCCTCTCATTCACTGA 570 0.4316 MGGCCCCSSKDTDSAQNTYYYYPRVSEEHVPLSSNHGAASVFAGGLLVDTNLDTSIPDTYTPPPAPAPFNVTLGPNPTLPVAREICADKTNASAAGANHEASAKLEELKESAGLKVQTDLELRKLVEPIILEEEEDVCPICLEEYDAENPKLTTKCDHYFHLACILEWMERSETCPVCDQDMVLDPLIH 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01079 189 Pfam Ring finger domain 137 178 IPR001841 -
Aip05g01079 189 SMART ring_2 138 178 IPR001841 -
Aip05g01079 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 184 IPR013083 -
Aip05g01079 189 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 188 - -
Aip05g01079 189 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 188 - -
Aip05g01079 189 SUPERFAMILY RING/U-box 131 184 - -
Aip05g01079 189 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01079 Aip-Chr5 15513890 15515848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01079 1 185 C3H Transcription Factor Family AT5G41350 48.571 1.05e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01079 - - adu:107488151 375.17