Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01074 ATGGTGCCGGAGAAGGTGAAGAAACAGCTTGCTTTAGCTGTGAGAAGCATTCAATGGAGCTATGCAATCTTTTGGTCTAGCTCACCTACCCAACCAGGGGTGTTGAGCTGGGGTGAAGGTTATTACAATGGAGACATCAAAACTAGAAAGACAAGCCAAGTGGCAGAACATAACTCTGATCAAATAATAAGCTTACAGAGAAGTGAGCAGCTGCGAGAGCTATACTCGTCCCTTGCAGACTCGAAATCCTGCTCGCAGACGAAAAGGCCATCGGCGGCACTGTCCCCTGAAGATCTCACAGATACTGAGTGGTTCTACTTGGTTTGCATGTCCTTTGTGTTCAACATTGGCCAAGGTTTACCTGGAAGATCATTGGCATATGGTCAACCTATTTGGTTGTGCAATGCTCATTCTGCTGATAATGGTGTTTTCTGTCGCTCATTACTTGCTAAGAGTGCATCCATTCAGACAGTGGTGTGCTTTCCCTTTCTGGATGGGGTTATTGAGCTAGGTACAACTGATCCGGTCTCCGAAGACTATAGTCTTATTCAAGTGATAAGGAATTCTTTCTTGGACATTCTTGAAACCAACCTTCCAAATAATCCAGGAGCTAATTTGAACACAAGAAACAAGGAAGAAGGTGGTGTTGCTTGTGGAGAATTTGACCATAATGCTTATGGTCTTAAACTAACCCCAGAAGTAATAGGATATGAACTAATCAACATAACTTCTCCTACTACTAGTTCAAATGCATTACAAGCCAACCAACAAACAGATGGAAGAACAATGTTTCCAACTGAATTCAGCAACTGTTTCCATAACTCCAGGAATTCTAGTGATTGTTTGTCCGAAAATCATTGTGCACAGGACCTTCAACAATGCAATGATAACCCAAAAACAACCTTGGTGAATCTCGGAAGCGACGATAAGCATTATCAGAGGATACTCTCTGCCCTTCCAATACGCCCTGATGATGACCGGTTAATCATGAGAGTGCATCTTCGAAATTTTCGTGGGGAATCAAGCTTTGCCATTTGGAAGCAACTAGGATCAATGGATTGTCAAAGATCAAGAAGAGGAGGAACACCACAGAACTTGTTAAAGAAGGTATTGTTTGAAGTTCCTCTGATGCACATGGACGGATTGCTTGAGTCTCAAGAAAAGATCGGTTCCAAAGACAGAATGAGATTATTAGAGGTAGATGATGTTGGCATGAACCATGCTTTGTCAGAAAGAAAGAGAAGAGCAAAACTAAACGAAAGGTTTTTAACTCTAAGATCAATGGTTCCTACAATTAGTAAGGATGACAAGGTTTCAATATTAGATGATGCCATGGAATACCTTAGAAAACTTGAGGAAAAGGTAAGGAAGTTAGAAGCTGAAAAGGATGTAACAGATTTGGATGGTATAGTAAGTACAAGAACATCTCAGGATATGGTGGAGAGGGCTTCTGATAACAATAGCAACAAGAATTCGAAATCGGTGTCAAACAAGAGGAGGGCTTGTGAGGCTGCTGGTGATGAAGAGATGAACAATTCAGAGATTGATGTTGGAATCTATGTGAGTGAGAGTGAAGTTGTGATTGAAATGAAGTGTCCTTGGAGAGAAGGACTTCTGCTGGAAACTGTGGAAGCACTTAGCAGCCTCCATTTAGATTGTCATTCACTTCAGTCATCAAAAGCTCATGGGACTCTCTATCTCACAATTAAATCTAAGTTCAGAGGAGCAAATAATGTTGCACCAGTAAAAAGGATTAGACGCACACTCCAAAAAGCGGCTATGAAGAGTTGA 1791 0.4149 MVPEKVKKQLALAVRSIQWSYAIFWSSSPTQPGVLSWGEGYYNGDIKTRKTSQVAEHNSDQIISLQRSEQLRELYSSLADSKSCSQTKRPSAALSPEDLTDTEWFYLVCMSFVFNIGQGLPGRSLAYGQPIWLCNAHSADNGVFCRSLLAKSASIQTVVCFPFLDGVIELGTTDPVSEDYSLIQVIRNSFLDILETNLPNNPGANLNTRNKEEGGVACGEFDHNAYGLKLTPEVIGYELINITSPTTSSNALQANQQTDGRTMFPTEFSNCFHNSRNSSDCLSENHCAQDLQQCNDNPKTTLVNLGSDDKHYQRILSALPIRPDDDRLIMRVHLRNFRGESSFAIWKQLGSMDCQRSRRGGTPQNLLKKVLFEVPLMHMDGLLESQEKIGSKDRMRLLEVDDVGMNHALSERKRRAKLNERFLTLRSMVPTISKDDKVSILDDAMEYLRKLEEKVRKLEAEKDVTDLDGIVSTRTSQDMVERASDNNSNKNSKSVSNKRRACEAAGDEEMNNSEIDVGIYVSESEVVIEMKCPWREGLLLETVEALSSLHLDCHSLQSSKAHGTLYLTIKSKFRGANNVAPVKRIRRTLQKAAMKS 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01074 596 PANTHER TRANSCRIPTION FACTOR EGL1 3 592 - -
Aip05g01074 596 PANTHER TRANSCRIPTION FACTOR TT8 3 592 - -
Aip05g01074 596 MobiDBLite consensus disorder prediction 476 507 - -
Aip05g01074 596 Gene3D - 402 466 IPR036638 GO:0046983
Aip05g01074 596 Pfam Helix-loop-helix DNA-binding domain 406 452 IPR011598 GO:0046983
Aip05g01074 596 MobiDBLite consensus disorder prediction 476 495 - -
Aip05g01074 596 SMART finulus 408 457 IPR011598 GO:0046983
Aip05g01074 596 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 404 464 IPR036638 GO:0046983
Aip05g01074 596 Coils Coil 441 468 - -
Aip05g01074 596 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 190 IPR025610 -
Aip05g01074 596 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 402 451 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01074 Aip-Chr5 15303076 15306947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01074 2 593 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G63650 42.540 1.02e-150 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g01074 bHLH-MYC_N 9e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01074 - - gmx:100808167 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01074 05 15303076 15306947 Aip05g01074 05 15303076 15306947 ECH