Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01070 ATGGGGAAGGGTAGACCTAGGGCTGTGGAGAAGGGTGTAGTTGGGGCGAGCAACACTGTTACCTGCTGCGAGTCCACCAGTGTACCCTCAGGTCCTGTGTATTACCCTACTGAGGATGAGTTCAAGGATCCTTTAGATTATATTTACAAGATTAGGCCTGAGGCTGAGCCTTATGGGATTTGTAGGATTGTTCCACCAAAGGGTTGGAACCCTCCTTTTGCTTTGGATCTGGATACTTTCACTTTTCCCACCAAGACACAGGCCATTCACAAGCTCCAGGCTCGCCCCGCCGCATCGGACTCCATGACTTTTGACTTGGAGTACTCTAGGTTCTTGCAGGACCAGTGTGGTAAGAAGTCTAGAAAGAGGGTTGTGTTTGAAGGGGAGGACTTGGACTTATGCAAGTTGTTCAATGCGGTTAAGCGCTTTGGCGGGTACGATAAGGTTGTTGATGCCAAGAAGTGGGGGGATGTTGCTAGGTTTTTGAGGCCGGCCGGGAAGATTACGGATTGTGCTAAGCATGTGTTGTGTCAATTGTACCGGGAGCATTTGTATGATTATGAGGAGTTTTATAATAAGATGAATCAAGGGACTGCTGTGAACTGTAAGAAAGGTGAGAGAGATGAGAGGAAGAGTGATCACAGAGTGCAATCCTCGACGTCCAAGAAGCATCCCCGGAGGGTTAGTGGTCTGAAAGTTAAGGATTGTAAAGTACATGTAGAAGAAGAACGTGATCAGATTTGTGAGCAGTGCAAGAGTGGTTTGCACGGTGAAGTCATGCTTTTGTGTGATAGGTGCGATAAGGGCTGGCATACTTATTGTCTTTCCCCGCCGTTGAAGCAAATTCCACAGGGAAATTGGTACTGTTTCAGCTGCTTGAATTCTGACAGGGACAGCTTTGGTTTTGTGCCTGGGAAGCATTACACATTGGAAGCCTTTAGGCGTATTGCTGATCGGTCAAGGAGGAGATGGTTTGGATCAGGGCCTGTTTCAAGGGTGCAGATGGAGAAAAAATTTTGGGAGATTGTCGAAGGATCAGTTGGTGAAGTTGAGGTTATGTATGGAAATGACTTGGATACATCTGTATATGGAAGTGGTTTCCCACGCGTTGCTGATCAGAAAATGCAATCCGTTGACGACAAGTTATGGCAAGAATACGCAACAATCCCATGGAATCTCAATAACTTGCCAAAGCTGAAAGGCTCAATGCTTAGATCTATTCAACACAATATCACTGGTGTTATGGTACCCTGGCTATATATTGGGATGTTGTTCTCATCTTTTTGCTGGCACTTCGAGGATCACTGCTTTTACTCAATGAATTATTTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGCAATCAAGCCAGTGCATTTGAGAAGGTGATGAGAAGTAGTCTTCCTGATCTTTTCGATGCGCAACCTGATCTACTTTTCCAGCTTGTTACTATGTTAAACCCATCTGTCTTGCAAGAAAATGGGGTTCCTGTCTACAGCGTACTTCAGGAGCCTGGGAATTTTGTTATAACCTTCCCACGATCATATCATGGAGGTTTCAATCTTGGTTTGAATTGTGCAGAGGCAGTAAATTTTGCTCCAGCTGACTGGCTACCTTTTGGTGCATTTGGTGCTGATCTCTATCAGCGGTATCACAAACCTGCTGTATTGTCGCATGAGGAGCTTCTTTGTGTAGTAGCCCAGCATGGCGATGTTGACAGCAGAGTATCTTCATATTTGAAGAAGGAATTGTTGAGAATATCAGATAAAGAAAAGTCTTGGAGAGAGAAACTATGGAAAGATGGTATAATTAAATATTCTCGCATGACTCCTCGCAAATGTCCACAATATGTGGGAACTGAGGAGGATCCAACATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCTGTTGTGTGCAGTTGCCGACCATCATCTTTTGTGTGCCTGGAGCACTCGGAACACCTTTGTGAGTGTAAGACTGTGAAGCTGCGTCTTCTCTACCGTCATTCACTTGCAGAATTGTTTGACTTGGCCTTTTCCATGGAAGAATTTACTTCTGATGACAAGGCTGAATGTAGAAGTGTTAGAAGGCAATCTTCTTGTCAGGGTGCTTTGACCAAAAAGGTGAAAGGTATCTCCGTTAATTTAAATCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACGATTCTTCAGAATCCATTTCTGAGCAATGCATTTGTTACTACACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCTGAGATGGACTCTGTTCGAGATATGGTGAAGACCTTGATTGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGATTGCATAACAAAAATTGAGTTTTGGTATCAAGACTCAACTGTAAAGAAAGTTCATTTAGAATTCATTGATGAGTTATTGAGATTTAATCCTCCACCTTGCAATGAGCCTAATTATCATAAATTGAAGGAATACGCTGAAGAAGCGAGGTTATTAGTTCAGGATATTGATACTGCTTTATCGAGGTGTTCAAAGATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTGCCCATCTACATGAAAGAGAGTAAGAAATTAGAAGGGAGGATTTCTTTGATTAAGACATGGCTGGACAGTGTTAGAAAGTGTATCTCTGCGAGACATCCTACTGTCTTAGAGTTTAACATTCTTTACAAGTTAAAATCAGAGATCTTGGATCTTCAAGTTCATCTTCCAGAGATAGAGGTGTTTGAGAATATGCTAAATCGAGCTGAATCTTGTAGCATCCAATGTCGTGAGATGTTAGAAGGTCCTATGAATCTACAGAATGTTAGTTTGCTGCTTAAGGAATGGGACAATTTTGCAGTTGCTGTACCAGAGTTGCAGCTTCTAAGACAATACCATTCAGATACTGTGTTGTGGGTTGCCCATGTTAATGATCTTTTAAGGAGAGCTCATGTGCAGGGTGATCAACATAATACAGTTAATGAATTGATGCACATTTTTGAAGAAGGTTCATCTTTAAAAATTCAAGTTGATGAGTTGCCATTAGTTGAGATGGAGCTAAAGAAAGCTAGTTGCCGGGAGAATGCTTTGAAGGCTCATGATTCTAGAATGCCTTTGGAATTCATTCAGCAACTGCTAGAGGAAGCTAAAATGCTACACATTGAGGAAGAGAAACTATTCGTTGATTTATCTTGTGTCCTTGCTCTTGCCATACCTTGGGAGGAAAGGGCTAGAGAGATTCTTTCACATGAGAATCCTATTTCTGACTTTGAGGACATGATCAGGGATTCAGAAAACATATTTGCTATTCTTCCTTCACTTAATGATGTTAAAGACGCATTTTCTGAAGCTAATTTATGGTTAAGGAATTCAAAGCCATATTTAGTCTCTTCTCCGTGTGCTTCAAGTTCTTTGCTGAAAGTTGAGGACTTGCAGATGTTGGTTTCTGAATCGAAGCTTCTTAAAGTATCTTTGGGAGAAAGAAGGATGCTGGAACTTGTTTTGAAGAACTGCAAACTTTGGGAATGTGAAGCATCTTCTCTACTGGATGATTGTCGGTGCCTTTTCGAATTGGATAACTGTGTTGATGGAGTAAGCAGTGATTTAATGTTTAGGGTGGAAGATTTGATTGCAAGAATCCAATCTGCTATAGCATCTGGTGTTTCACTTGGTTTTGACTTCATAGAGATTTCAAAACTTCAAGCATCTTGTTCTACACTACAATGGTGCAAAAGAGCCCTTTGTTTCAGTGATTGTCCGTCATCGTTAGAGGATGTTTTGGAGGTTGCGGAAGGTCTTTCTCATTCCTCTGTTTCTGGTGCGCTGTTGAAAGTTCTGGTTGATGGAGTTGAATGGCTTAGGAGAGCGTTGGAGGAAATATCTCGACCTTGTAATTCTAGAAGATGCCATTTGACTGAGGTTCAAGATACTCTTAATGATTATAAGAATGTTAATATGACCTTTGGAGCAGTATATGGTCAACTTGAAGAAGCCATTAGAAAACATATGTTATGGCAAGAACAAGTGCACCAATTTTTTGGCCTGAATTCTAGGGATCGATCTTGGTCATTGATGTTGCAGCTGAAGGAGCTTGGAGATACTGTTGCTTTCAGTTGCTCAGAGCTGGATATGATTTTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAACGATGCTTAGACAAAATAGGATCTTCTGTCCAAACTGACAATTTGCTGTTTAATGTGCTGAAGAAGATAAAACAGACTCTAGAGAGATCATTGTTCATATATGGTGATGTTAAAGAAAGGAAGGATCAAAACCTCTGCATTTGCTGTCTTTTGCATTCTGAGTGTCAGGAATTTCTTACTTGTTCGACTTGTATGGACTGCTATCATTTGCAGTGCATTGGACTAACAGCAAAGGACACCTGCATTGAAAACTACAAATGCCCTTACTGTGCAATTTTGATTGGTGAATCTCATTATCCAAGTGGAGGTGGCCTCCTGAGGTTTGGTAAGAAGCGTATTGAATTGAAAATTCTCACTGCTCTTCTGTCGGAAGCTGAACATTTCTGTTTGAGGATTGATGAAATGGAAGTTCTGAATGAACTTGTTGAGAAAGCCCTTCTGTGCAAATCTTTCTTGAGAGAAATACTGAACTTTGCATCAACTGTTGTTGATGAAGATATAAGCATTGTCTCTGAAAAATTGATGAAAGCTATAAAGGCTAGCGATGTGGCTGGTGTCTATGATGAACATGATAATTCTGACCTTGAGTTGGCTTTAGCAAAAAACTTGTGGAAAATTCAAGTCAATAGATTGCTAAATGGTGTATGCAAGCCCACAATCCGGCAGATTCAGAAGCATATGAATGAGGGAGTGGATATGGAAATATCAGCTGAAGATCACTATATGCTTAAACTTACAAGTGTGAAATGCTTGGGTTTGCAGTGGGCAGAACTAGCAAAAAAGGTGGTGGCAAACGATTCTGGGGCACTCAGCCTAGATAAAGTTTTGGAAGTAATAGTAGAAGGTGAAAACTTGCCTGTTGATGTTGATGAGGAACTCAAGATGTTGAGGTTTCGATGCATGCTTTACTGTATATGTCGAAAGCCTTATGATAAGAAAGGGATGATAGCATGCAAACAATGCAATGAATGGTACCATTTTGATTGCATGAAATTACCATGCACGCAGCAGCTCTACATTTGTCCTGCATGCAACCCCTGTGCAGAAGAACCATTGCCTACAAACCATGAGAGATTAGGTAGTGCTAAATTTGTGGAGCCTAAAACCCCATCTCCGAGGCACACAAACCCGAGAAAGAAACAGAAAAGAGATGTGGGCAATGTCACTTGCAAGATGTTTACAACAGCAACAGCAGCAGAAGATAGAGATAGTAGTAGGTGTAGGAAATCAAATGGGATAGAATGTCTTAGGTGGCAAAACCGAAAGCCTTTTAGAAGAGCAGCTAAGAAGCGTGTTGAGCTTCGAAGTCTTACTCCAATTCTATACACACAACGATAA 5526 0.4144 MGKGRPRAVEKGVVGASNTVTCCESTSVPSGPVYYPTEDEFKDPLDYIYKIRPEAEPYGICRIVPPKGWNPPFALDLDTFTFPTKTQAIHKLQARPAASDSMTFDLEYSRFLQDQCGKKSRKRVVFEGEDLDLCKLFNAVKRFGGYDKVVDAKKWGDVARFLRPAGKITDCAKHVLCQLYREHLYDYEEFYNKMNQGTAVNCKKGERDERKSDHRVQSSTSKKHPRRVSGLKVKDCKVHVEEERDQICEQCKSGLHGEVMLLCDRCDKGWHTYCLSPPLKQIPQGNWYCFSCLNSDRDSFGFVPGKHYTLEAFRRIADRSRRRWFGSGPVSRVQMEKKFWEIVEGSVGEVEVMYGNDLDTSVYGSGFPRVADQKMQSVDDKLWQEYATIPWNLNNLPKLKGSMLRSIQHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGNQASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSVLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPFGAFGADLYQRYHKPAVLSHEELLCVVAQHGDVDSRVSSYLKKELLRISDKEKSWREKLWKDGIIKYSRMTPRKCPQYVGTEEDPTCIICQQYLYLSAVVCSCRPSSFVCLEHSEHLCECKTVKLRLLYRHSLAELFDLAFSMEEFTSDDKAECRSVRRQSSCQGALTKKVKGISVNLNQLATEWLLQSSTILQNPFLSNAFVTTLRKAEQFLWAGSEMDSVRDMVKTLIEAQKWAEGIRDCITKIEFWYQDSTVKKVHLEFIDELLRFNPPPCNEPNYHKLKEYAEEARLLVQDIDTALSRCSKMSELELLYSRACGLPIYMKESKKLEGRISLIKTWLDSVRKCISARHPTVLEFNILYKLKSEILDLQVHLPEIEVFENMLNRAESCSIQCREMLEGPMNLQNVSLLLKEWDNFAVAVPELQLLRQYHSDTVLWVAHVNDLLRRAHVQGDQHNTVNELMHIFEEGSSLKIQVDELPLVEMELKKASCRENALKAHDSRMPLEFIQQLLEEAKMLHIEEEKLFVDLSCVLALAIPWEERAREILSHENPISDFEDMIRDSENIFAILPSLNDVKDAFSEANLWLRNSKPYLVSSPCASSSLLKVEDLQMLVSESKLLKVSLGERRMLELVLKNCKLWECEASSLLDDCRCLFELDNCVDGVSSDLMFRVEDLIARIQSAIASGVSLGFDFIEISKLQASCSTLQWCKRALCFSDCPSSLEDVLEVAEGLSHSSVSGALLKVLVDGVEWLRRALEEISRPCNSRRCHLTEVQDTLNDYKNVNMTFGAVYGQLEEAIRKHMLWQEQVHQFFGLNSRDRSWSLMLQLKELGDTVAFSCSELDMILSEVEKVENWKKRCLDKIGSSVQTDNLLFNVLKKIKQTLERSLFIYGDVKERKDQNLCICCLLHSECQEFLTCSTCMDCYHLQCIGLTAKDTCIENYKCPYCAILIGESHYPSGGGLLRFGKKRIELKILTALLSEAEHFCLRIDEMEVLNELVEKALLCKSFLREILNFASTVVDEDISIVSEKLMKAIKASDVAGVYDEHDNSDLELALAKNLWKIQVNRLLNGVCKPTIRQIQKHMNEGVDMEISAEDHYMLKLTSVKCLGLQWAELAKKVVANDSGALSLDKVLEVIVEGENLPVDVDEELKMLRFRCMLYCICRKPYDKKGMIACKQCNEWYHFDCMKLPCTQQLYICPACNPCAEEPLPTNHERLGSAKFVEPKTPSPRHTNPRKKQKRDVGNVTCKMFTTATAAEDRDSSRCRKSNGIECLRWQNRKPFRRAAKKRVELRSLTPILYTQR 1841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01070 1841 SMART JmjN_1 30 71 IPR003349 -
Aip05g01070 1841 ProSitePatterns Zinc finger PHD-type signature. 1700 1740 IPR019786 -
Aip05g01070 1841 SMART ARID_2 95 188 - -
Aip05g01070 1841 Gene3D Cupin 237 556 - -
Aip05g01070 1841 MobiDBLite consensus disorder prediction 1757 1780 - -
Aip05g01070 1841 PANTHER LYSINE-SPECIFIC DEMETHYLASE 29 878 - -
Aip05g01070 1841 CDD ARID 104 188 - -
Aip05g01070 1841 SMART cupin_9 385 551 IPR003347 -
Aip05g01070 1841 ProSitePatterns Zinc finger PHD-type signature. 248 292 IPR019786 -
Aip05g01070 1841 SUPERFAMILY FYVE/PHD zinc finger 1432 1488 IPR011011 -
Aip05g01070 1841 SMART PHD_3 1699 1741 IPR001965 -
Aip05g01070 1841 SMART PHD_3 247 293 IPR001965 -
Aip05g01070 1841 SMART PHD_3 1441 1487 IPR001965 -
Aip05g01070 1841 MobiDBLite consensus disorder prediction 202 227 - -
Aip05g01070 1841 Pfam jmjN domain 32 65 IPR003349 -
Aip05g01070 1841 Pfam JmjC domain, hydroxylase 418 534 IPR003347 -
Aip05g01070 1841 SUPERFAMILY ARID-like 81 201 IPR036431 GO:0003677
Aip05g01070 1841 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Aip05g01070 1841 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Aip05g01070 1841 Pfam ARID/BRIGHT DNA binding domain 121 188 IPR001606 GO:0003677
Aip05g01070 1841 SUPERFAMILY FYVE/PHD zinc finger 238 295 IPR011011 -
Aip05g01070 1841 Gene3D Cupin 13 134 - -
Aip05g01070 1841 ProSiteProfiles Zinc finger PHD-type profile. 245 295 IPR019787 -
Aip05g01070 1841 SMART bright_3 99 193 IPR001606 GO:0003677
Aip05g01070 1841 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 29 878 - -
Aip05g01070 1841 Pfam PHD-finger 247 294 IPR019787 -
Aip05g01070 1841 Pfam C5HC2 zinc finger 628 677 IPR004198 -
Aip05g01070 1841 CDD PHD_RSF1 248 292 - -
Aip05g01070 1841 Pfam PLU-1-like protein 944 1188 IPR013637 -
Aip05g01070 1841 Pfam PLU-1-like protein 1142 1397 IPR013637 -
Aip05g01070 1841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1685 1742 IPR013083 -
Aip05g01070 1841 ProSiteProfiles JmjC domain profile. 385 551 IPR003347 -
Aip05g01070 1841 SUPERFAMILY FYVE/PHD zinc finger 1696 1748 IPR011011 -
Aip05g01070 1841 SUPERFAMILY Clavaminate synthase-like 377 571 - -
Aip05g01070 1841 MobiDBLite consensus disorder prediction 202 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01070 Aip-Chr5 15237894 15257446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01070 40 95 JUMONJI Transcription Factor Family AT4G20400 51.667 6.75e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aip05g01070 PLU-1 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01070 K11446 - gmx:100789512 2938.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01070 05 15237894 15257446 Aip05g01070 05 15237894 15257446 ECH