Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01066 ATGGCGCCGAAGCAGAGAACAGCGAGGAAGGTGAGCCGGAACCCCGAACTGATTAGGGGAATCGGAAAGTACTCGAGGTCCAAGATGTACCACAAGAGGGGACTCTGGGCCATCAAGGTCAAAAACGGCGGCGTTTTGCCTCGCCACGATCCCAAACCTAAGCCTCAAGCACCTTCTCAGAAGCCTCCCAAATTTTATCCTGCTGATGACGTCAAGAAACCCCTTGTCAACAAGCACAAGCCCAAACCTACCAAGCTCAGGCTTTTGATGCCTACTGATGTCAAAATTGAAGGGCACATGGGCCCTTTCAAAATCAATGGAGTGCCTTTGAGACGTGTGAACCAATCCTACGTCATTGGTACATCAACCAAAGTAGATGTCTCTGGTGTTAATGTGGATAAATTTGATGACAAATATTTTGCAAAGGAAGCTGAGAAGAAGAAGAAAAAGGAAGAGGGAGAGTTCTTTGAATCAGAGAAAGAGGAGAAAAAAGTTCTGCCCCAGGAGAAGAAAGATGATCAGAAAACGGTGGACTCTGCTTTGTTAAAAGCCATTGAAAGCGTTCCAGATTTGAAGGCATATATTGGTGCTAGGTTTTCCCTCAAGCAAGGCATGAAGCCTCATGAGCTAGTTTTTTAA 639 0.4585 MAPKQRTARKVSRNPELIRGIGKYSRSKMYHKRGLWAIKVKNGGVLPRHDPKPKPQAPSQKPPKFYPADDVKKPLVNKHKPKPTKLRLLMPTDVKIEGHMGPFKINGVPLRRVNQSYVIGTSTKVDVSGVNVDKFDDKYFAKEAEKKKKKEEGEFFESEKEEKKVLPQEKKDDQKTVDSALLKAIESVPDLKAYIGARFSLKQGMKPHELVF 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01066 212 Pfam Ribosomal protein L6, N-terminal domain 3 62 IPR005568 GO:0003735|GO:0005840|GO:0006412
Aip05g01066 212 PANTHER 60S RIBOSOMAL PROTEIN L6 101 212 IPR000915 GO:0003735|GO:0005840|GO:0006412
Aip05g01066 212 Pfam Ribosomal protein L6e 105 212 IPR000915 GO:0003735|GO:0005840|GO:0006412
Aip05g01066 212 SUPERFAMILY Translation proteins SH3-like domain 101 152 IPR008991 -
Aip05g01066 212 MobiDBLite consensus disorder prediction 147 176 - -
Aip05g01066 212 PANTHER 60S RIBOSOMAL PROTEIN L6 1 88 - -
Aip05g01066 212 PANTHER 60S RIBOSOMAL PROTEIN L6 101 212 - -
Aip05g01066 212 PANTHER 60S RIBOSOMAL PROTEIN L6 1 88 IPR000915 GO:0003735|GO:0005840|GO:0006412
Aip05g01066 212 MobiDBLite consensus disorder prediction 41 84 - -
Aip05g01066 212 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01066 Aip-Chr5 15208307 15209554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01066 1 212 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 69.658 1.52e-94 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01066 K02934 - gmx:100784101 305.064