Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01043 ATGGGTGCCTACAAGTATGTCTCTGAGCTATGGCGCAAGAAGCAGTCAGATGTCATGAGGTTCCTTCAGCGTGTAAGGTGCTGGGAATATCGTCAGCAACCTTCCATTGTTCGTGTGACAAGACCTACACGCCCTGACAAGGCCCGTCGCCTAGGTTATAAGGCTAAGCAGGGCTATGTTGTTTACCGTGTTCGTGTAAGGAGGGGTGGCCGCAAGAGACCAGTTCCCAAAGGTATTGTTTATGGTAAGCCAACAAACCAGGGTGTTACCCAACTGAAATTCCAGAGGAGCAAGAGGTCTGTTGCTGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTTAGGGTCCTCAATTCTTATTGGGTGAATGAGGACTCAACCTACAAGTACTTTGAGATAATTATGGTAGATGTTGCCCATGCTGCCATCAGAAACGATCCAAGAATCAATTGGCTGTGCAATCCAGTGCACAAACACAGGGAATTGCGTGGACTTACTTCAGCTGGCAAAAGCAACAGAGGTCTACGTGGCAAGGGACATCTTTATCACAAAAATCGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTTTCCCTTCGTCGTTATCGTTGA 615 0.4894 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIIMVDVAHAAIRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGKGHLYHKNRPSRRATWKRNNTLSLRRYR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01043 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Aip05g01043 204 MobiDBLite consensus disorder prediction 164 186 - -
Aip05g01043 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Aip05g01043 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Aip05g01043 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 - -
Aip05g01043 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Aip05g01043 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Aip05g01043 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01043 Aip-Chr5 15035029 15037416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01043 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 91.667 8.97e-128 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01043 K02877 - gmx:100306052 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01043 05 15035029 15037416 Aip05g01043 05 15035029 15037416 ECH
Aip05g01043 05 15035029 15037416 Aip01g01393 01 43373770 43375999 PCT