Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01029 ATGGAGAGGCACAGATGCAAGCTTTGTTCGAGGACATTCGCCAATGGCAGAGCCCTCGGTGGTCACATGAAGGCTCACTTAGCCACGCTTCCTCTGCCACCCAAGCCTCATCAACCACCTCCTCAACCACTTTCTTTTGAGTACTCTTCTTCTTCTTCTTCTTCAGAATCAGAACACGATGACGATGATGATGAAGAAAAAGGTTATGGAGAGAGCGAGACTGAGTCAAAGAACAAACCAACTCGGACACGAAGACGATCCAACCGTACACGAAAATCCTCCATTATGAACCTTACAAACAAGAGGACCAAGCTCATGAGTTTCATGGAGTCACCAGCATCAATAGCAACAGAGGCAGCAGAGCCTGTTAGCTCCGTTTCCGATACTTCGCCGGAAGAAGACCTGGCCATGTGCCTCATCATGCTGTCAAGGGACAAATGGAGAAAGACAAGTGTTGAAGAAGAAGAAGAGATGAAGTTGAAGAACAAGAAGGTTCTTCGAGGGAAGCATCATCATCATCATCATCGTCTGCAGTGTGACAAGTGTGGGAAAACGTTTCGATCTTCAGGGGCATTGGGGAGCCACAGAAGCATATGTCTCTGTGATGAAGCTGATGGAAGTGAAAGAATCTTTCAATGCCCGTATTGTTCAAAGGTTTTCGGGTCGGGTCAAGCACTCGGTGGCCATAAGAGATCTCATCTTCTCCCATCTTCTTCTTCTTCTTCTCCTCCTTCCATTATCAATGCTAATCTTAGATTGAAACAACAAAGCTTCATAGATCTCAACTTGCCAGCTCCACCTGAAGAAGACGACCTTAGTGTTCTCTCCGATGCATAA 837 0.4636 MERHRCKLCSRTFANGRALGGHMKAHLATLPLPPKPHQPPPQPLSFEYSSSSSSSESEHDDDDDEEKGYGESETESKNKPTRTRRRSNRTRKSSIMNLTNKRTKLMSFMESPASIATEAAEPVSSVSDTSPEEDLAMCLIMLSRDKWRKTSVEEEEEMKLKNKKVLRGKHHHHHHRLQCDKCGKTFRSSGALGSHRSICLCDEADGSERIFQCPYCSKVFGSGQALGGHKRSHLLPSSSSSSPPSIINANLRLKQQSFIDLNLPAPPEEDDLSVLSDA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01029 278 Pfam C2H2-type zinc finger 3 28 - -
Aip05g01029 278 Pfam C2H2-type zinc finger 211 233 - -
Aip05g01029 278 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Aip05g01029 278 ProSitePatterns Zinc finger C2H2 type domain signature. 213 233 IPR013087 -
Aip05g01029 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 211 233 IPR013087 -
Aip05g01029 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Aip05g01029 278 MobiDBLite consensus disorder prediction 28 101 - -
Aip05g01029 278 SUPERFAMILY beta-beta-alpha zinc fingers 177 233 IPR036236 -
Aip05g01029 278 Gene3D Classic Zinc Finger 175 233 - -
Aip05g01029 278 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 66 - -
Aip05g01029 278 Pfam Zinc finger, C2H2 type 178 197 IPR013087 -
Aip05g01029 278 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 71 278 - -
Aip05g01029 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 198 IPR013087 -
Aip05g01029 278 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 71 278 IPR044303 GO:0006355
Aip05g01029 278 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 66 IPR044303 GO:0006355
Aip05g01029 278 SMART c2h2final6 4 26 IPR013087 -
Aip05g01029 278 SMART c2h2final6 211 233 IPR013087 -
Aip05g01029 278 SMART c2h2final6 177 197 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01029 Aip-Chr5 14827613 14828696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01029 1 275 C2H2 Transcription Factor Family AT3G60580 36.577 4.11e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip05g01029 zf-C2H2_6 1.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01029 - - aip:107643045 465.692