Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01013 ATGGAGCTTAGCACCAATGAGATTACCGGCAAGAGAGTGAAACTCACCTCATGGAGAACTCCTAATGATCCATCCATAGGAGACTTCACTATGAGTCTTGAACCGCTTCACATCGCTCAAGTGTTCATATGGAGAGGAACTCAACCTTATTGGCGAAGTGGTCCATGGAACGGTCAAGTTTTTATTGGGATACCTACTATGAACGCGAACTATCTTGACGGGTTCTCCTTAGATGGTGAAGGTGAAACCAACGGCACTTACTACCTCTCATACAACTATGCGAATGTGTCAATGATGTATGTGTTGAGTTCTGATGGAAACCTTCATGAAACCTGTTGGGATTATGCAAAGAGAGATTGGATTGTGGACTGGTCTGCTGTAAGCTCTGTGTGTGATGTTTATGGAGAGTGTGGTCCCTTTGGAATCTGTGATCCTAAAAATTCACCTATCTGCAGCTGTTTGAGAGGGTTTGAGCCAAAAAATGCTCAAGAGTGGAATAAACAAAACTGGAGCAGCGGTTGTGTGAGGAAGAAGCCTCTGCAATGTGATGAGAGAGTTAGAAATAATGGGAGTAGTGATGGGTTTGTGAAGCTGCAAAATGTCAAGGTTCCAGATTTTTCACAGTGGTTATCTTCCATTGCTTATGATTGCAGAACTGAGTGCTTGGCAAATTGCTCTTGCATTGCATACACTTATGATTCTGGCATTGGCTGCATGTTATGGTGTGGAAACTTGATGGACATACAGCAATTCTCAATGGGAGGCATTGATCTTTACATTCGAGTTTCCTCTTCGGAACTTGAAGAAAACTCACACACTGATCATAGTTCTTTTGGTCATAATAGCAATGGCTCTTATTGTGGCTTGTGCATATATCTTGAGGAAAAGGGCAATCAGAGGAGAATTCAGAGAAGAAGTTATGTTAATGATATGAGTCACGTTGAACTTCCGGATAATTCACTATTTGAGCTTGAAAAGCTTGCTACTGCAACAAACAACTTCCACTCAAATAATAAGCTAGGACAAGGTGGTTTTAGATCTGTACATAAGGGTAGATTGGAAGATGGACAGGAGATAGCAGTTAAAAGACTTTCAAAAACATCTGGACAAGGTGTAGAAGAATTTATGAATGAAGTTATGGTAATATCAAAACTTCAACATCGAAATTTTGTCAGACTTCTTGGATGTTGCATCGAAAGAGATGAAAAGATTTTGATCTATGAATACCTACCAAACCGAAGTTTGGATGCACATATATTTGGCTTAGAAATTGTGGAGAAATGA 1284 0.4026 MELSTNEITGKRVKLTSWRTPNDPSIGDFTMSLEPLHIAQVFIWRGTQPYWRSGPWNGQVFIGIPTMNANYLDGFSLDGEGETNGTYYLSYNYANVSMMYVLSSDGNLHETCWDYAKRDWIVDWSAVSSVCDVYGECGPFGICDPKNSPICSCLRGFEPKNAQEWNKQNWSSGCVRKKPLQCDERVRNNGSSDGFVKLQNVKVPDFSQWLSSIAYDCRTECLANCSCIAYTYDSGIGCMLWCGNLMDIQQFSMGGIDLYIRVSSSELEENSHTDHSSFGHNSNGSYCGLCIYLEEKGNQRRIQRRSYVNDMSHVELPDNSLFELEKLATATNNFHSNNKLGQGGFRSVHKGRLEDGQEIAVKRLSKTSGQGVEEFMNEVMVISKLQHRNFVRLLGCCIERDEKILIYEYLPNRSLDAHIFGLEIVEK 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01013 427 SMART ntp_6 190 262 IPR003609 -
Aip05g01013 427 Pfam Protein tyrosine and serine/threonine kinase 336 418 IPR001245 GO:0004672|GO:0006468
Aip05g01013 427 Gene3D Phosphorylase Kinase; domain 1 308 409 - -
Aip05g01013 427 ProSiteProfiles PAN/Apple domain profile. 182 263 IPR003609 -
Aip05g01013 427 Pfam PAN-like domain 190 248 IPR003609 -
Aip05g01013 427 ProSiteProfiles Protein kinase domain profile. 334 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g01013 427 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 1 420 - -
Aip05g01013 427 PANTHER - 1 420 - -
Aip05g01013 427 SUPERFAMILY Protein kinase-like (PK-like) 299 423 IPR011009 -
Aip05g01013 427 Pfam S-locus glycoprotein domain 51 161 IPR000858 GO:0048544
Aip05g01013 427 CDD PAN_AP_plant 179 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01013 Aip-Chr5 14542575 14544840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01013 299 423 Receptor kinase-like Gene Family AT4G23190 48.800 2.01e-35 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip05g01013 S_locus_glycop 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01013 - - ahf:112746902 580.482