Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g01002 ATGGAACATGACTCGATCATTGTGCAATTAAAAGAAACCAGATCAAGCATGAACAATGTGAATAAGATCACCAAAACACACAGAATCTCACTTGACGAAGCACTTGAGCAAAATGCAAAACAATGTCATGGAGATAGAGAGAGTGTGTTATATCCAAAGGAAGTGCAGTTATTAAGTAGATTTAGGACTCTTAAAGTTGCATGTGGAGTATGGCACACTGCAGCTATTATAGAGGTAACACTTCAGTCTAGTTCAAATGTTTCATCAAGGAAGCTCTTCACTTGGGGTGATGGTGATCAGTATCGTTTGGGGCATGGAAACAAGGAAACATACCTTCAACCGACTTGTGTCTCATATCTTATAGAAGCATGTGGAAACACTATGACTGTTGCCCCCACTACATCTGGTCATATTTTCACTATGGGAGGCACTGAACATGGTCAACTAAGAAATTCTTTGTCCGATGGAAAAGTACCAATGCTAGTACAAGATAAGTTGGTAGGTGAGTATGTTGAGGAAATATCATGTGGATCTCATCATGTGGCTGTATTGACATTAAGAAGTGAACTATATACATGGGGGAAAGATGCCAATGGAAGATTGGGACATGGAGACACAGAAGATAGGAAGGGTCCAATAATAGTGGAAGTCTTGAAAGAAAGGCATGTAAAAAACATTTCGTGTGGGTCGAAGTTTACAGCTTGCATATGCATCCATAAATGGGTCTCGGGAGTTGAGCAATCTAGTTGTACCGCATGTAGGCAACCATTTAGATTTACTAGAAAAAGGCACAATTGTTATAATTGTGGGTTAGTGCATTGCCATGGTTGCAGTTCAAAAAAGGCATTGAGGGCAGCATTGGCTCCAACACCCGGAAAACCTCATCGTGTGTGTGATTCTTGTTATACTAAGATTAAAAATGTTGAGTCGAATTCTGGTGCCATTTTTAATAGGAGAGCTACTACTCCACCTCGTACTTCTATAGATGGAAGGGAAAGATTTACCCTGGGAGAAATAAGATCTTCAAGAACTCTCTTCCCTCTCTCAAGGATTCACAAGACTACTACAGAGCAAGTTGTTCAGGTTCCATCACTAGTGCAATTGAAAGATGTTGCATTCCCAAGTTCAACAGGTTCAATAATGCAAAATCTTTTGAAGCCTACCATCGCTGCCATACCTCCAACTCCAAGTCCACCACCAACTCCATCACTCATTTCAAGGCCCGCATCCCCGTATGCAAGAAGGCCAAGCCCTACGCGTTCCGGCGCTGGTGGATTCTCTAGAAGTCTTCTTGATAGTTTGAGGAAAACAAATGAGCTTAAGAATCAAGAAGTATCAAAATTACAGAAACAAATTCAAAGTTTGAAACAGAAAAGTAACATGAAAGATGTGGAAAATCAAAAGCTTCGCCAACATATTAAAGAAGCTACAACATTGGCAGCAGATGAGTCTTCTAAGCATAAAGCAATGCTAGAAATTTTTGAGTGCACTATCATTCAGTTGAAGCAAATGGCTGAGAAGTTGCCACCAGAGATTTCAGAAACTGAAAATTTGAGAATTGCACTTACTCAAGCTGAAGATTTTCTGAAAGAAAACTCGACATCTGAAACATTTTCTGTGCCATCAATATCAGAGTCTACTCGACAAAATGCACCTGATCCTGCCACAGATATTGGGGATTCAAAAATGCAAGAGCACAATACAGAAGAATATCATGAAGCGGCGGCTTCGGACCCATCTCATGATGAGGAGAATGTCCTTCAAGAAAGAAATGGATCATCTGTATCCGATAATAGAACAGCAGTGCAACCACAAAGCTCCGAGGAAACATCAAGGTTGGCAAGAGATGGAGAAACACAAGTTATTGAACAATTTGAGCCTGGTATTTACGTGACACTAATAGTAAGGCCTAATGGTGTCAAAATTTTCAGGAGAGTTAGATTTAGCAAGCGAAGGTTTCATGAGCAACAAGCAGAAGAATGGTGGAACATAAATAAAGAGAGGGTGCTTCAGAGATATGGTCAACAAGCTAGAAGTGATGCTAATGCATCATTTAGCACCCCGACACCACCTGCTGAAGAAAATATTGAGGTAGCACCTACCTAA 2106 0.405 MEHDSIIVQLKETRSSMNNVNKITKTHRISLDEALEQNAKQCHGDRESVLYPKEVQLLSRFRTLKVACGVWHTAAIIEVTLQSSSNVSSRKLFTWGDGDQYRLGHGNKETYLQPTCVSYLIEACGNTMTVAPTTSGHIFTMGGTEHGQLRNSLSDGKVPMLVQDKLVGEYVEEISCGSHHVAVLTLRSELYTWGKDANGRLGHGDTEDRKGPIIVEVLKERHVKNISCGSKFTACICIHKWVSGVEQSSCTACRQPFRFTRKRHNCYNCGLVHCHGCSSKKALRAALAPTPGKPHRVCDSCYTKIKNVESNSGAIFNRRATTPPRTSIDGRERFTLGEIRSSRTLFPLSRIHKTTTEQVVQVPSLVQLKDVAFPSSTGSIMQNLLKPTIAAIPPTPSPPPTPSLISRPASPYARRPSPTRSGAGGFSRSLLDSLRKTNELKNQEVSKLQKQIQSLKQKSNMKDVENQKLRQHIKEATTLAADESSKHKAMLEIFECTIIQLKQMAEKLPPEISETENLRIALTQAEDFLKENSTSETFSVPSISESTRQNAPDPATDIGDSKMQEHNTEEYHEAAASDPSHDEENVLQERNGSSVSDNRTAVQPQSSEETSRLARDGETQVIEQFEPGIYVTLIVRPNGVKIFRRVRFSKRRFHEQQAEEWWNINKERVLQRYGQQARSDANASFSTPTPPAEENIEVAPT 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g01002 701 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 244 306 IPR017455 -
Aip05g01002 701 SUPERFAMILY RCC1/BLIP-II 42 241 IPR009091 -
Aip05g01002 701 Pfam Regulator of chromosome condensation (RCC1) repeat 43 76 IPR000408 -
Aip05g01002 701 Pfam Regulator of chromosome condensation (RCC1) repeat 92 127 IPR000408 -
Aip05g01002 701 Pfam Regulator of chromosome condensation (RCC1) repeat 189 236 IPR000408 -
Aip05g01002 701 MobiDBLite consensus disorder prediction 391 406 - -
Aip05g01002 701 Pfam Transcription factor regulating root and shoot growth via Pin3 619 673 IPR013591 -
Aip05g01002 701 ProSiteProfiles BRX domain profile. 619 674 IPR013591 -
Aip05g01002 701 MobiDBLite consensus disorder prediction 589 610 - -
Aip05g01002 701 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 90 135 IPR000408 -
Aip05g01002 701 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 188 239 IPR000408 -
Aip05g01002 701 SUPERFAMILY FYVE/PHD zinc finger 240 312 IPR011011 -
Aip05g01002 701 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 66 76 IPR000408 -
Aip05g01002 701 SMART fyve_4 238 307 IPR000306 GO:0046872
Aip05g01002 701 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 136 187 IPR000408 -
Aip05g01002 701 MobiDBLite consensus disorder prediction 532 554 - -
Aip05g01002 701 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 42 681 - -
Aip05g01002 701 Gene3D - 122 243 IPR009091 -
Aip05g01002 701 Pfam FYVE zinc finger 240 306 IPR000306 GO:0046872
Aip05g01002 701 MobiDBLite consensus disorder prediction 391 428 - -
Aip05g01002 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 315 IPR013083 -
Aip05g01002 701 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 42 681 - -
Aip05g01002 701 MobiDBLite consensus disorder prediction 532 619 - -
Aip05g01002 701 MobiDBLite consensus disorder prediction 676 701 - -
Aip05g01002 701 MobiDBLite consensus disorder prediction 559 588 - -
Aip05g01002 701 Gene3D - 35 121 IPR009091 -
Aip05g01002 701 Coils Coil 431 458 - -
Aip05g01002 701 MobiDBLite consensus disorder prediction 676 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g01002 Aip-Chr5 14244693 14247820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g01002 580 676 Major Intrinsic Protein MIP AT1G31880 29.897 5.73e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g01002 - - aip:107640212 1284.24