Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00934 ATGAACATTCATAATCATCATTACTCGGACGATGAAGTGATTCTGGCTTCGTCGATGCCGAAGAAGAGAGCGGGGAGGAGGGTGTTCAAGGAGACGAGGCACCCAGTGTACAGGGGAGTGCGGAGGAGGAACAACAACAAGTGGGTTTGCGAGATTCGTGTTCCGAACAACGTTAACAACACAAGGATATGGCTTGGAACTTATCCTACACCGGAAATGGCAGCACGTGCACACGATGTTGCTGCTCTTGCGCTTCGCGGCAAGTCCGCTTGCCTCAACTTCGCGGACTCTGCTTCGCGCTTGCAGCTTCCGTCTTCCACCGATCCGGAGGACATCAGGAGGGCTGCCGTTGAGGCTGCGGCGGCGTTCGCGGCGGAGGACAGCGCCCAGCAGGAGCATCAGGAGCAGAGTGTTGGGGAATGCGTGGTGGTGATTGAAGAGGATGTGAACAAGGCTTCTGAATTTGAGGTTAACGATGTTCCGGCGGTTTCTGAATTTGAGGATTGGCATGATTTGGTTATGAGCATGGCGGATGAGCCTCTAAGGTCTCCTCCTCATCCTGCTTTTGCGAGAGATGGCAGTAATGACGTGGAGATATTCGATGTTGGGTTGCCACTCTGGAGTTTCTCCATTTGA 636 0.5346 MNIHNHHYSDDEVILASSMPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEIRVPNNVNNTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSASRLQLPSSTDPEDIRRAAVEAAAAFAAEDSAQQEHQEQSVGECVVVIEEDVNKASEFEVNDVPAVSEFEDWHDLVMSMADEPLRSPPHPAFARDGSNDVEIFDVGLPLWSFSI 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00934 211 CDD AP2 37 97 IPR001471 GO:0003700|GO:0006355
Aip05g00934 211 ProSiteProfiles AP2/ERF domain profile. 36 95 IPR001471 GO:0003700|GO:0006355
Aip05g00934 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 8 211 - -
Aip05g00934 211 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Aip05g00934 211 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Aip05g00934 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 211 IPR045277 GO:0003700
Aip05g00934 211 SMART rav1_2 36 101 IPR001471 GO:0003700|GO:0006355
Aip05g00934 211 Pfam AP2 domain 35 87 IPR001471 GO:0003700|GO:0006355
Aip05g00934 211 Gene3D AP2/ERF domain 36 96 IPR036955 GO:0003700|GO:0006355
Aip05g00934 211 SUPERFAMILY DNA-binding domain 36 97 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00934 Aip-Chr5 13035913 13036923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00934 10 209 AP2-EREBP Transcription Factor Family AT1G63030 50.495 8.29e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip05g00934 AP2 2.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00934 - - gmx:100789097 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00934 05 13035913 13036923 Aip05g00934 05 13035913 13036923 ECH