Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00933 ATGGCTTCATCATCATCTTCAAAGAGGCACCCGCTGTACCACGGAATCAGGTGTCGAGGAGGCAAATGGGTCTCCGAAATCCGGCAGCCACGTAAGGCTTCAAGAATATGGCTGGGGACGTTCCCCACGGCTGAGATGGCGGCTGCCGCCTACGACGTTGCCGCATTAGCACTCAAAGGCGACAGCGCCGTTCTCAACCTTCCTGAGTCAGCTGGAAAGTACCAAATTCCTGTTACTAACTCCCCTGATGACATCCGCAGGGCTGCCACTGCTGCTGCCGCTTTGATGAAGAAGAACCCTCAAGAACCCATCACCACTCCTCACATTATTACTGTTAATAATAATAATAATAATAATAATAATGATAATAACACTCTTGTTGATGGTATTAACAACAACGATATTATTAGTACGGCTTTGTGTTCATCATCATCATGGTATGAGGATAATGATTTCATGGACGAGGAAGCTATATTCCGCATGCCAAGTTTGCTGGTGGATATGGCTGAGGGCATGCTTCTGTCGCCGCCGAGAATAATACTGAGCCCATCTCCGCCATCGTACAACTCCGGTGACAGTTTGTGGAGTTACTTTTGA 597 0.4757 MASSSSSKRHPLYHGIRCRGGKWVSEIRQPRKASRIWLGTFPTAEMAAAAYDVAALALKGDSAVLNLPESAGKYQIPVTNSPDDIRRAATAAAALMKKNPQEPITTPHIITVNNNNNNNNNDNNTLVDGINNNDIISTALCSSSSWYEDNDFMDEEAIFRMPSLLVDMAEGMLLSPPRIILSPSPPSYNSGDSLWSYF 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00933 198 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Aip05g00933 198 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Aip05g00933 198 Pfam AP2 domain 13 60 IPR001471 GO:0003700|GO:0006355
Aip05g00933 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 198 - -
Aip05g00933 198 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677
Aip05g00933 198 Gene3D AP2/ERF domain 12 69 IPR036955 GO:0003700|GO:0006355
Aip05g00933 198 PANTHER ETHYLENE RESPONSE FACTOR 1 198 - -
Aip05g00933 198 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00933 Aip-Chr5 12982677 12983536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00933 7 197 AP2-EREBP Transcription Factor Family AT5G52020 46.193 4.63e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip05g00933 AP2 3.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00933 - - gmx:100811020 198.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00933 05 12982677 12983536 Aip05g00933 05 12982677 12983536 ECH