Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00898 ATGAAGCGGGCAAGGAAATCGAAATCGAACAGGGTTTCGTGGGCTCCTGCGTCTAATTTGTGTCAGATCAAATTGTTTCTGTCTGACGACTGTCCTTCAAAAGTTGGACTGAAATCTCAAGATCATCTTCAAGCAAAGACATCTTCAATGTTGCCTTCAAGTACTAATGAACATATGGACTTACCTCCTGGATTTGAAGACAATCACTTCTTAAACCAGCCAAAGGTTGAACTCTCTCGCATCTCTCCAATTAAATGGGAGCGCCCTCCTCTGTTTGCTTTCAGACATGATTGGCGCGTTGCTGCTGGTGAAGAAAGTAAGGAGAAAATGGATCAAAAGCTAAGAGAAATGAAAGTGCTTGAAGCAGTTTATCCTCGCATTTCTGCCATACCTCCCAGCCCTTCTGTTTCTCATGATGTAGACAAGGAAGGTTATGATGATAACCACACTCCTCTCATCCCTATCATTCCCATTGAGGAGGAAGATTCGATGGATATTAATCCTGAAGTGTCAGACGCAAAACTCGCAGATACCCCCACTAAATTGCTGTCACAAAACTTGCAGCAATATATAGCAGCTGCAACACCTATTAATTCACAATGCAACACCTCTGCTGCTGTTCCCTTATCTGCAGGTGGAAACTCCATGCTGGCAATTTCTCCTGGTTCGGAACCAGATTTAGCTGCAGCCTCAGCTCTGGTAGCAGCAGCCATTTTGAAGAGTAATGAGCAAGGAAACCCAATTGATATGGATCTACTTGTTAAAATATTTAATGACCCAATAATGATAGAGAAATTGGTTAACCAACGGGGAACTGCAACCGCCACCATAACTACCTCTTCAAATACTGGGTTGAAATCTGCTGCTTCTGGGACTACACCCACAAGCACAGTTGGTTTAGTACCTTCTTCTGCTCCAAAGCAAGCAACTTCCTTAGCCTCCATGTTTCAATCTACACTTAATAAGCCAGCAATTCCCCCAGTTCCATTGTCTAGGCCTTCCTCTGGTAATTTAGTAACTAGCTCAGTTACCCTGCCTCCACAACCAACTACACAATCACCTTCACCTCCACCTCCACCTCCATCCACTTCTACATTTAATAAGCACAGGTCTGTCAACAATAACCATGTAACGAATGGAGCACTTCCCTCTTTAGAACCCCAGCCTCCTCCTCAAGATACAACTCTGTTATCTGGTATAAAGCGCACGTCATCATTACCTTGTGTGAATTCATCCAGTGAATTGAGCACAGTGCCTTTGAATTCAACTGCTGTGAATTTGCATGCAGGTGCGAACCAGGTGCGAGCAACGGCTGCCACAGTGGCTTATCAAACAAGTAGCACCGGTTCTTCTTTTGCAGTGAAGGATGCCAACTATTATAAGAACCTTATTAGGCAACATGGTGCAGATAAGCAAGACGGTCAAGAATCACTAATAGGTATCCGTCATAATAATTTCCAAGACTTTAAAATGCTACATAACCTTAAACAAAGGGAAGTGATATTCAAAAACCAGAAACCTTGCATATACTTTAACAGCTCAAGGGGTTGCCGAAATGGTGCAAATTGCCCCTATCAGCATGATATCTCAGCTCAGTGGGGAGCTGGTAATGACCTAGTGGCACAAAATGCAAAAAGAATGAAACTAGGTACAGAAGTTAATGGGAGGATATAA 1674 0.4319 MKRARKSKSNRVSWAPASNLCQIKLFLSDDCPSKVGLKSQDHLQAKTSSMLPSSTNEHMDLPPGFEDNHFLNQPKVELSRISPIKWERPPLFAFRHDWRVAAGEESKEKMDQKLREMKVLEAVYPRISAIPPSPSVSHDVDKEGYDDNHTPLIPIIPIEEEDSMDINPEVSDAKLADTPTKLLSQNLQQYIAAATPINSQCNTSAAVPLSAGGNSMLAISPGSEPDLAAASALVAAAILKSNEQGNPIDMDLLVKIFNDPIMIEKLVNQRGTATATITTSSNTGLKSAASGTTPTSTVGLVPSSAPKQATSLASMFQSTLNKPAIPPVPLSRPSSGNLVTSSVTLPPQPTTQSPSPPPPPPSTSTFNKHRSVNNNHVTNGALPSLEPQPPPQDTTLLSGIKRTSSLPCVNSSSELSTVPLNSTAVNLHAGANQVRATAATVAYQTSSTGSSFAVKDANYYKNLIRQHGADKQDGQESLIGIRHNNFQDFKMLHNLKQREVIFKNQKPCIYFNSSRGCRNGANCPYQHDISAQWGAGNDLVAQNAKRMKLGTEVNGRI 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00898 557 MobiDBLite consensus disorder prediction 281 303 - -
Aip05g00898 557 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 549 - -
Aip05g00898 557 MobiDBLite consensus disorder prediction 333 348 - -
Aip05g00898 557 ProSiteProfiles Zinc finger C3H1-type profile. 502 530 IPR000571 GO:0046872
Aip05g00898 557 MobiDBLite consensus disorder prediction 349 364 - -
Aip05g00898 557 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 549 - -
Aip05g00898 557 MobiDBLite consensus disorder prediction 365 382 - -
Aip05g00898 557 MobiDBLite consensus disorder prediction 324 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00898 Aip-Chr5 12434255 12439257 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip05g00898 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00898 - - adu:107488052 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00898 05 12434255 12439257 Aip05g00898 05 12434255 12439257 ECH
Aip05g00898 05 12434255 12439257 Aip07g02456 07 103126704 103130090 ECH