Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00882 ATGAAGCAGGGGTTGGATCATGTTTCGGGCGTTGAAAGAAACAGGGAAGAACGAAACAAACAATGCCTTGTTACATCTGCACCTAGTCCAATCCAATTCTATGTGCCCACTCACCTCACCAGACCGACCAAGCCCCAATTCATCTCAATCCCAATCTCAATCCTAGCTAGGATGGAGCAACAACAGCTTCAGCAGAGTGGAGCTGCCACCGCCGGAGCAGCACCGCCGGTGGAGGGAGCTAGGGATTTGGGAGATTCGAAGACAGTTGGAGTTCCCGCTGCGGTTGCCGGCGATGTTGTCATGGCGGAGAGGGACGGCGGCGCCACGGCGGTTAAGAGGAAGCGGGGCCGTCCGGCGAAGGGTGCTCCGAGGGCGTCGGCGGCGGGAGCGGCCGCGAGGCTGCAGCAGAAGAAGGAGGAAGAGGAAGAGGAGGATGTTTGCTTCATATGCTTCGATGGTGGAAGCTTAGTTCTTTGTGATCGCCGGGGTTGTCCGAAAGCGTATCATCCCGCGTGTATTAAGCGAGACGAGGCCTTCTTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCTTTTGTCAGAAGGCCTCCCAATTTTTGTGCTATACTTGTACATATTCGGTGTGCAAGAGTTGTACAAAATATGCTGATTTTGTGTGTGTCAGAGAAAATAAAGGTTTGTGCGGAATATGCATGAGAACTATAATGCTGATTGAAAACAATGGCCAGGGAAATACGGAGAAGTGTGAAGTGGATTTTGATGACAAAACCAGCTGGGAATATCTTTTCAAGGTGTATTGGATGTTTTTGAAAGGGAAGATATCTTTAACATTTGATGAGCTCCTTCGAGCTAAAAACCCCTGGACAGGTGTTTCTCCATTGGGTGGTAAGGTTGAATGTCACCGTGAAATTTATAATACTAAGGATGACAAAGGTTCTGGTTCAGAGAACTCCTGTATTGACATAGAATCAAATAATTTGAAAAACAAGAAATCTAGGAGACAGCCAATGCTTCATAGCAATGGGGTTGGCTCCGATATGATAACTTCAGCCGGTGACAACTGTGTGCCTTTGCCTGAATGCTCAAATTGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCACATATGAAAAGTGGTGATACATCTCGCCTGTCTCAATTTGATGTCCAGGGTCTCTTGTTAGAGTATGTGAAGAAGAACAATCTTCGAGACCCCCAGCAGAAATGCCAAATTGTTTGTGATCATAGACTACTAAAATTGTTTGGAAGAGCACGTGTTGGTCACATTGAAATGTTAAAGCTCCTTGAACCCCACTTTCTTACAAAAGAGAATGGCCCTGCAGAAGATACACTTAGAGCAGGAGTCACGAACACTGTTGCTAGCGAAGGGGAGGCAAAAGACAATTGCAATAAGCAGTTGATTTCAGTTGATGATAAGGAATGTAAAACAGATAAAAAAGATGATGTGCATTTGCCACAAAATAATCCAGATGTGTATGCTGCAATAAATGCTCACAACATTAACTTGATCTACCTGCGGCGAAGTCTTTTGGAAAATCTAACTGAAGATGCTGAAAGTGTTCGTGACAAGGTTGTTGGTTCATTTGTGCGGATAAGGATCACTAGTAGTGACAAAAAACAAGAGATGTATAGGCTTGTGCAAGTTGTAGGTACAAGTAAGGCTGCTGAGCCTTACAAAATTGGAACAAGAACAACTGATATGATGCTTGAGATTTTAAACTTAAATAGGAAGGAGGCCATATCAATAGATGAGATTTCAAATCAGGAGTTCTCTGAGGATGAATGCAAGCGTTTGCGTCAAAGTATAAAATATGGGCTTTCCAATAGATTGACTGTGGGTGAGATCATGGACAAAGCATTGACATTTCAAGCAATGAGAGTTAATGAT 1917 0.4444 MKQGLDHVSGVERNREERNKQCLVTSAPSPIQFYVPTHLTRPTKPQFISIPISILARMEQQQLQQSGAATAGAAPPVEGARDLGDSKTVGVPAAVAGDVVMAERDGGATAVKRKRGRPAKGAPRASAAGAAARLQQKKEEEEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSFCQKASQFLCYTCTYSVCKSCTKYADFVCVRENKGLCGICMRTIMLIENNGQGNTEKCEVDFDDKTSWEYLFKVYWMFLKGKISLTFDELLRAKNPWTGVSPLGGKVECHREIYNTKDDKGSGSENSCIDIESNNLKNKKSRRQPMLHSNGVGSDMITSAGDNCVPLPECSNWASKELLEFVAHMKSGDTSRLSQFDVQGLLLEYVKKNNLRDPQQKCQIVCDHRLLKLFGRARVGHIEMLKLLEPHFLTKENGPAEDTLRAGVTNTVASEGEAKDNCNKQLISVDDKECKTDKKDDVHLPQNNPDVYAAINAHNINLIYLRRSLLENLTEDAESVRDKVVGSFVRIRITSSDKKQEMYRLVQVVGTSKAAEPYKIGTRTTDMMLEILNLNRKEAISIDEISNQEFSEDECKRLRQSIKYGLSNRLTVGEIMDKALTFQAMRVND 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00882 639 MobiDBLite consensus disorder prediction 107 137 - -
Aip05g00882 639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 237 IPR013083 -
Aip05g00882 639 PANTHER UNCHARACTERIZED 77 639 - -
Aip05g00882 639 Pfam Plus-3 domain 509 612 IPR004343 GO:0003677
Aip05g00882 639 SMART swib_2 369 447 IPR019835 -
Aip05g00882 639 Gene3D SWIB/MDM2 domain 361 450 IPR036885 -
Aip05g00882 639 CDD PHD5_NSD 146 191 - -
Aip05g00882 639 ProSitePatterns Zinc finger PHD-type signature. 147 207 IPR019786 -
Aip05g00882 639 ProSiteProfiles Plus3 domain profile. 504 637 IPR004343 GO:0003677
Aip05g00882 639 SUPERFAMILY FYVE/PHD zinc finger 140 199 IPR011011 -
Aip05g00882 639 SUPERFAMILY Plus3-like 505 632 IPR036128 GO:0003677
Aip05g00882 639 PANTHER BNAC08G48800D PROTEIN 77 639 - -
Aip05g00882 639 SUPERFAMILY SWIB/MDM2 domain 367 444 IPR036885 -
Aip05g00882 639 SMART PHD_3 146 192 IPR001965 -
Aip05g00882 639 Coils Coil 124 144 - -
Aip05g00882 639 Gene3D - 505 634 IPR036128 GO:0003677
Aip05g00882 639 CDD SWIB-MDM2_like 367 442 - -
Aip05g00882 639 ProSiteProfiles Zinc finger PHD-type profile. 144 210 IPR019787 -
Aip05g00882 639 ProSiteProfiles SWIB/MDM2 domain profile. 361 444 IPR003121 -
Aip05g00882 639 SMART rtf1 504 614 IPR004343 GO:0003677
Aip05g00882 639 MobiDBLite consensus disorder prediction 66 85 - -
Aip05g00882 639 Pfam SWIB/MDM2 domain 369 442 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00882 Aip-Chr5 12130761 12134369 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00882 140 224 PHD Transcription Factor Family AT4G14920 34.118 9.16e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aip05g00882 Plus-3 4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00882 - - gmx:100801151 824.698