Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00881 ATGCGTGAAATTCCAGAGGTACACTCTGACCCAAATCTGGATTTGATGTTCGAGTCTGATGAAGATGCAGGAGAGTCAGATGAAAGGAAGCAAGATGGAAATATATGGTCGAAGTATCCTGGTTTTGACAGAAAAGAGAAGGAGCCCACTTTGCCTAAAAGTTGTGATAGTGTCTTGAATGATGATGGATGCAAAACACAAGATTTTTCTGCTGCTGTCCATGAACAGAGTGGCAATGCCTGCGTGACAAAAAGTCAGATAAAACCTAATGATACAGTGTTTGATGATAACCCTAATGTAGTTGTGAAATCAGAACCATCTGGTGTTGCGTTGGACATTTCATCGTCTCCTCAATCTGTAGGGGTAGAACAGTCATTCAATGATTTTGTGAATGATAAATCATGGCATTATCAGGACCCAACTGGGAAGGTTCAAGGACCTTTTTCCATGTTGCAACTGTTTAAGTGGAATGCAAGTGGAGGTTTCCCTCCTAATCTCAGGATATGGAGGATAAATGAAAAACAAGATAGCTCTATATTGTTAACCGATGCCCTAAGTGGGAAGTGTTCCAAAAATGTGTCAATGCCATATTTCAGCCAACTGCTGTCTTTGGGGATCAGTGGTACAGTGGATACCAAAGAGGATATTAAAGATTATAGTCAGGATGGTTGCAGCACTGCAGCAAGGAATGAAACTCGTTCAGACAACCAAATTAATGAGCAGAACAGGGAGCTAAAGGTGGATGATACTCGTACCCAGTCTGATGGTAAAGATGAATCTGTTAGGAGCAATGGATGGCAGGAACAGCCCCATGCATACCATCCACAACCTTCAGTGGCCATTTCTGAGAATATGAAGGAGAATTCTGATAAATTAAATGAAGGTAATCGGATTGGGGGAAACTCTGCAGATAAAGGGAATCCTGGTTTGAACAGGACTTCTGATGGTCAGAGTAACAGTGGGCAGAGTTACCAGAAGCAATCATACAGTGAAGATAATTCAGGGCAATCTTCTGAACAGAACTGGAGAGGCCCTCGTGTTAACAATTCTTCCAATTGTGTGGTTACCACATCAGCTGAAGTTTTGGTTACAAAGACATCACCACCTAAGCTAGGATTTGATTTACATAGTTCTCCATCCCATCCTGACCAGAACTGGATAGGCCCTCATGTAAATACTTCTTCTGATTGTGTGGTTCCCACATCAGCTGAAGTTTCTGTGCCAAAGACATCACCACCTAAGCTAGGATTTGATTTGCATATTCCTCCATCACAGCTTGAACAAGACTGGAGAGACCCTCATGTAAATACTAATTCCAATTGTGTGGTTACTACATCAGCTGAAGTTTCTGTGACAAAGATATCACCACTTAAGCTAGGATTTGATTTGCATAGTCCCCCATCCCATCCTTCGACGTGGCAAGCATTCATCGGTGAGACCACTGACTTTAGCTCATTAGTTGACGTTGATGAATCAGTCTCAGATCTGTTAGCTGAGGTGGAAGCAATGGAATCACTTGGTGGTGGTGGTGGTGGTGGCGGCGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGTAAAGGTGATGCACTTAGCTCCACTGGTGATTTGCACTTGCAATCTCAGTCAACAGCAGCAGAGGAACCATTGCGGCAAGCAGATATACATCATCATCATCATCATCATCATCATCATCAGAGAGTATCTGGGGAACATTCTTCAAGGAGTTCTGAAGTTAAGGTGGGTACAAAGAGCATTAGTGTTTCAGGTTATCAATGGGAATCAGGCTCAGAAAATTCAACCATTGGTCCATCGACTGCAACCTGGAGCATTGCTACAGACCCCACTTGGAGAGTCGGGTCAGAGAATACAAACTTGGGATGGAGTGGAATGGATAGAGGAAATGTGAACATTGGCTGGGGAGTGGGGCAGTCAGCAGTGCAGGAGAACAGGAGCACAAGTTCATACACTCCTACAGTTTCTCCAAGCTTTGGTGGAAGTCAAGCAAGATATGGCAGCGATCGACCTTCTGTGCCTAGAGATCGGGGTTTTCATGGTCATGGTAGGGAATCAGCTGTTGCTAGAGGCAGAACTGCGTGGAACCGGCAAACTTCAGTTGGTGTTGGAAACGGAGGCTCACACAGGCCTCTGCCCAAAGGGCAACGAGTCTGTAAATTTTATGAAAGTGGGCGCTGTAAGAAGGGGGCATCCTGTGATTACTTCCACCCATGA 2235 0.4438 MREIPEVHSDPNLDLMFESDEDAGESDERKQDGNIWSKYPGFDRKEKEPTLPKSCDSVLNDDGCKTQDFSAAVHEQSGNACVTKSQIKPNDTVFDDNPNVVVKSEPSGVALDISSSPQSVGVEQSFNDFVNDKSWHYQDPTGKVQGPFSMLQLFKWNASGGFPPNLRIWRINEKQDSSILLTDALSGKCSKNVSMPYFSQLLSLGISGTVDTKEDIKDYSQDGCSTAARNETRSDNQINEQNRELKVDDTRTQSDGKDESVRSNGWQEQPHAYHPQPSVAISENMKENSDKLNEGNRIGGNSADKGNPGLNRTSDGQSNSGQSYQKQSYSEDNSGQSSEQNWRGPRVNNSSNCVVTTSAEVLVTKTSPPKLGFDLHSSPSHPDQNWIGPHVNTSSDCVVPTSAEVSVPKTSPPKLGFDLHIPPSQLEQDWRDPHVNTNSNCVVTTSAEVSVTKISPLKLGFDLHSPPSHPSTWQAFIGETTDFSSLVDVDESVSDLLAEVEAMESLGGGGGGGGGGLESPTSIMKCGKGDALSSTGDLHLQSQSTAAEEPLRQADIHHHHHHHHHHQRVSGEHSSRSSEVKVGTKSISVSGYQWESGSENSTIGPSTATWSIATDPTWRVGSENTNLGWSGMDRGNVNIGWGVGQSAVQENRSTSSYTPTVSPSFGGSQARYGSDRPSVPRDRGFHGHGRESAVARGRTAWNRQTSVGVGNGGSHRPLPKGQRVCKFYESGRCKKGASCDYFHP 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00881 744 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 1 744 - -
Aip05g00881 744 MobiDBLite consensus disorder prediction 535 549 - -
Aip05g00881 744 MobiDBLite consensus disorder prediction 223 351 - -
Aip05g00881 744 CDD GYF 132 187 IPR003169 GO:0005515
Aip05g00881 744 SUPERFAMILY GYF domain 130 185 IPR035445 -
Aip05g00881 744 MobiDBLite consensus disorder prediction 556 570 - -
Aip05g00881 744 MobiDBLite consensus disorder prediction 1 15 - -
Aip05g00881 744 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 1 744 - -
Aip05g00881 744 MobiDBLite consensus disorder prediction 23 52 - -
Aip05g00881 744 MobiDBLite consensus disorder prediction 306 351 - -
Aip05g00881 744 ProSiteProfiles GYF domain profile. 132 186 IPR003169 GO:0005515
Aip05g00881 744 MobiDBLite consensus disorder prediction 505 586 - -
Aip05g00881 744 SMART gyf_5 133 188 IPR003169 GO:0005515
Aip05g00881 744 MobiDBLite consensus disorder prediction 650 720 - -
Aip05g00881 744 Pfam GYF domain 135 175 IPR003169 GO:0005515
Aip05g00881 744 MobiDBLite consensus disorder prediction 1 54 - -
Aip05g00881 744 MobiDBLite consensus disorder prediction 676 693 - -
Aip05g00881 744 MobiDBLite consensus disorder prediction 236 264 - -
Aip05g00881 744 ProSiteProfiles Zinc finger C3H1-type profile. 719 744 IPR000571 GO:0046872
Aip05g00881 744 MobiDBLite consensus disorder prediction 650 671 - -
Aip05g00881 744 SUPERFAMILY CCCH zinc finger 719 743 IPR036855 GO:0046872
Aip05g00881 744 Gene3D - 134 190 IPR035445 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00881 Aip-Chr5 12126866 12129505 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip05g00881 GYF 5.1e-12 CL0673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00881 - - gmx:100801151 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00881 05 12126866 12129505 Aip05g00881 05 12126866 12129505 ECH