Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00880 ATGGACCAACCGCTACAACAACAACAAACCACCACCGCCGAGGTCGTTAGGGATTCCGATTCGCAGCTTTCTGGAGTTCCCTCCGATGCTGACGTGGCCGAGAGAAGAGCGGCCTCTGCCTGCGCTCCCAACTCGGAGGTCGCCGTACCGGACGCCGCTGGTTTGAAGAGGAAGCGCGGTCGTCCGGCCAGGGGGGTTCCGAGAGCCACGGCGGCTCCTGCTCCGGTGAGGCAGAAGAAGGAGGAGGAGGATGTTTGCTTCATATGCTTCGATGGCGGAAGCCTCGTTCTCTGTGATCGCCGGGGTTGTCCTAAAGCGTATCATCCTGCTTGTATTAAGCGAGACGAAGCCTTCTTTCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCGTTTGTCAGAAGGGATCCCATTATATGTGCTATACTTGTACGTATTCTTTGTGCAGGGGATGTACAAGAGATGCTGATTTTGTTAGTGTAAGAGGAAATAAAGGATTCTGTGGAATGTGCATGAGAACTATAATGCTGGTTGAGAACCCTGGTCAGGAAAATAAGTGTGAAGTTGATTTTGATGACAAAACCAGCTGGGAGTATCTTTTCAAGATGTATTGGGTGTGTTTGAAAGAGAAGCTATCTTTGACAGTAGATGAGCTCCGCCAAGCTAAAAAACCGTGGAGAAGTGCTACTCCTTTAAGTTGTAAGGTTGAAACTCCCCATCAACTTTATCATCTTAAGGACGACAAAGGTGCTGCTTCTGAGAACTCTTGTATAGACATAGAATTTGATCATTTGACAGACAATAAGCCTAAGAGATGTGAGAAACAAATATTTATTTGGGATGGTACCTGGAATGACGTTAGATACCGTACACAAGACATTCCAGTTACCCGGGAGCTGATTGGAAACATATGTACAATGCCAAACCAGGTCAACCCTAATGTTGTAGCTGTTAATAATACTAATGTAGGAGTTGTAAAATCAGAACCATCTAGTGCTGCAGTGGACATTTCATCATTACTTCTCTCTACGGGGATGGAGCAGCCGTTTGACAATTTTGTGAACGATAAGTTGTGGCATTATCAGGATCCATCTGGGATGGTTCAAGGACCCTTTTCTATACTGCAGTTGCATAAGTGGAATGCAAGTGGACATTTCCCTCTGGACCTCAGAATATGGAGGACATATGAGACACAAGAGAACTCTATATTGTTGGCTGATGCACTTGTTGGGAAGTGTGCCAAAAATGTATCCGTGCCTTACAACAGCCCGATGTCTTTAGAGTCCTGTGTTACATTGGATAATAAAGATAACATTCAGGATGGTGGGAGGAATGAAACAAGGGTGGAAATTCATGCTGACAGCCGAATTATCAATTCCGGTGGAGCTGAGAAGGTTGATGATGCTGGTACCCCGTCTAACTGTAAAGATGAATCTGTTAGGAGCAATGGTTTGCAGTCTCATTCTTCTAGTTGGAATATGGCAGTCGACATGAATGAGGGGCAAAGTGGAAATCTTGAAAGGAGAGAGGAGTCGTCCAAATGTGAAATTTTGAATCCCATCCAGCCCAATTTGCTACCTTCAACCACCTTTTCGAAGAAACCAAATGAAAGCTCTCCTGATACAGTACAGGAAGGTCATGGAGTTGAGGGGAACACTGAAGATAATGTGAACCATTGCCAGAACAGGACTCCTGAAGGCCAGAGTAATAGTGGGAGTTACCAGAAAGACTGTGAGGAGAATTCAGGGCAGTCTTCTGGGCAGAACTGGGAATGCCCTCAAGTAATTAATCCAACGTGTAATACATCTATGTGGCAGGCAATCTTTGGTGAACCCGCCGAATTTGGCTCTTTAGTTGATGAATCGGTCTCTGATCTGTTGGCTGAAGTAGAGGCAATGGAGTCACTTGGTGGTGGTGGTTTGGAGTCTCCCACTTCAATCATGAAGTGTGATGATGAATTGACAGATGGTTCTAAAAATGATTGTCTCAGTTTTGCACTTGGCCTTGGCCTTGGCCCCATGCTTGATGCAGGGAAAGGTGATTCATTGAGCTCAACAGGTGACTTACACTTACCATCGCAGTTCACGACAGCAGAAGAACCATTTCGGCATGCTGGTGTGCACCAACATCAAAGAATACGCGGGGATCATTCTTCTAGCAGTTCTGTAGTTCAGTCTACTTTCTCTAGCATTAGCTGGAATCCAACCAGTCAATACTCCTGGGATCCTAAATGTTGA 2244 0.4563 MDQPLQQQQTTTAEVVRDSDSQLSGVPSDADVAERRAASACAPNSEVAVPDAAGLKRKRGRPARGVPRATAAPAPVRQKKEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSVCQKGSHYMCYTCTYSLCRGCTRDADFVSVRGNKGFCGMCMRTIMLVENPGQENKCEVDFDDKTSWEYLFKMYWVCLKEKLSLTVDELRQAKKPWRSATPLSCKVETPHQLYHLKDDKGAASENSCIDIEFDHLTDNKPKRCEKQIFIWDGTWNDVRYRTQDIPVTRELIGNICTMPNQVNPNVVAVNNTNVGVVKSEPSSAAVDISSLLLSTGMEQPFDNFVNDKLWHYQDPSGMVQGPFSILQLHKWNASGHFPLDLRIWRTYETQENSILLADALVGKCAKNVSVPYNSPMSLESCVTLDNKDNIQDGGRNETRVEIHADSRIINSGGAEKVDDAGTPSNCKDESVRSNGLQSHSSSWNMAVDMNEGQSGNLERREESSKCEILNPIQPNLLPSTTFSKKPNESSPDTVQEGHGVEGNTEDNVNHCQNRTPEGQSNSGSYQKDCEENSGQSSGQNWECPQVINPTCNTSMWQAIFGEPAEFGSLVDESVSDLLAEVEAMESLGGGGLESPTSIMKCDDELTDGSKNDCLSFALGLGLGPMLDAGKGDSLSSTGDLHLPSQFTTAEEPFRHAGVHQHQRIRGDHSSSSSVVQSTFSSISWNPTSQYSWDPKC 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00880 747 MobiDBLite consensus disorder prediction 519 592 - -
Aip05g00880 747 MobiDBLite consensus disorder prediction 477 502 - -
Aip05g00880 747 PANTHER UNCHARACTERIZED 6 278 - -
Aip05g00880 747 PANTHER UNCHARACTERIZED 320 724 - -
Aip05g00880 747 SUPERFAMILY GYF domain 356 410 IPR035445 -
Aip05g00880 747 SMART gyf_5 359 414 IPR003169 GO:0005515
Aip05g00880 747 CDD GYF 358 411 IPR003169 GO:0005515
Aip05g00880 747 MobiDBLite consensus disorder prediction 462 592 - -
Aip05g00880 747 PANTHER BNAC08G48800D PROTEIN 320 724 - -
Aip05g00880 747 PANTHER BNAC08G48800D PROTEIN 6 278 - -
Aip05g00880 747 Pfam GYF domain 361 400 IPR003169 GO:0005515
Aip05g00880 747 ProSiteProfiles Zinc finger PHD-type profile. 83 149 IPR019787 -
Aip05g00880 747 SMART PHD_3 85 131 IPR001965 -
Aip05g00880 747 ProSiteProfiles GYF domain profile. 358 412 IPR003169 GO:0005515
Aip05g00880 747 CDD PHD5_NSD 85 130 - -
Aip05g00880 747 SUPERFAMILY FYVE/PHD zinc finger 59 130 IPR011011 -
Aip05g00880 747 MobiDBLite consensus disorder prediction 1 26 - -
Aip05g00880 747 Gene3D - 360 414 IPR035445 -
Aip05g00880 747 MobiDBLite consensus disorder prediction 1 76 - -
Aip05g00880 747 ProSitePatterns Zinc finger PHD-type signature. 86 146 IPR019786 -
Aip05g00880 747 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 174 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00880 Aip-Chr5 12094922 12098725 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00880 83 171 PHD Transcription Factor Family AT5G36670 33.663 9.01e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00880 - - aip:107642933 1500.72