Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00874 ATGGAGTGCATGGTGGAGGGAGCGTTGAAGACGAGTTTTAGAAAAGAGATGGGGATGGGTATCAAATATACCACATCCCCGCAGAGGTCGTTCATGGAAGAACTTCAAAATGGCGCCCCTTCCGACGACTTTTTCGTTGACCAACTCCTTGACTTCTCCCAAGTAGACCAACAAGAAGAACAACAAGAAGAAGAACAAGAGCATAAGAAAGTTGGAGAAGACTCTGCTTGCGTGTCACTCTCGCCGCAACAGACCAACGACGTGGAAGAGACCTTTCCCTCTCTCCCCACCACAGACCTCAACCTTCCGGATGATGTGGCAGACTTGGAGTGGCTCTCTCATTTCGTCGAGGATTCCTTCTCTCAATTCTCTCCTCCCATCGTCCCCGCCGCCGTACCAACCTCAACCCCGCCTGCTCCGCCTCAACCTTGTTTCAACATCCCCGTTCCTGCCAAGGCGCGTAGCAAGCGAACCCGAACCGGTGTCAGGGTTTGGCCACTCGCCTCACCTTCCTTCGCCACCACTGACTCCTCCTCAACCACCGCCACCGCCACCTCCTCCACCTCTTCTTCCCCTTCCAGCCCCTTGCTAATTTACGCCACAAACCTGTCCCAGACCATGGACCAGGTTAGCTCTGACGCTCCGCCGAAGAAGCCCAAGAAGAAGGCCTCTCCGGAAGGCGGATTTCCGGCACAGGCACCGCGCCGCTGCAGCCATTGCGGCGTCCAGAAGACCCCGCAGTGGAGAACGGGACCACTCGGGGCGAAAACGCTCTGCAACGCGTGCGGGGTTCGGTACAAATCGGGTCGGCTCTTACCCGAATATAGACCCGCTTGCAGCCCAACGTTCTCCAGCGAGTTGCACTCCAACCACCACCGGAAAGTTCTGGAGATGCGGCGGAAGAAGGAGACCATAGGTGGTGGGGTTGATACCTCCGGTTTGGCCCCTCNNNNNTGCTTAATTTAA 966 0.5621 MECMVEGALKTSFRKEMGMGIKYTTSPQRSFMEELQNGAPSDDFFVDQLLDFSQVDQQEEQQEEEQEHKKVGEDSACVSLSPQQTNDVEETFPSLPTTDLNLPDDVADLEWLSHFVEDSFSQFSPPIVPAAVPTSTPPAPPQPCFNIPVPAKARSKRTRTGVRVWPLASPSFATTDSSSTTATATSSTSSSPSSPLLIYATNLSQTMDQVSSDAPPKKPKKKASPEGGFPAQAPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETIGGGVDTSGLAPXXCLI 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00874 321 SMART GATA_3 231 285 IPR000679 GO:0006355|GO:0043565
Aip05g00874 321 MobiDBLite consensus disorder prediction 36 99 - -
Aip05g00874 321 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 231 293 - -
Aip05g00874 321 MobiDBLite consensus disorder prediction 170 212 - -
Aip05g00874 321 Gene3D - 230 304 IPR013088 GO:0006355|GO:0008270
Aip05g00874 321 PIRSF Txn_fac_GATA_plant 17 315 IPR016679 GO:0003677|GO:0005634|GO:0045893
Aip05g00874 321 ProSiteProfiles GATA-type zinc finger domain profile. 231 267 IPR000679 GO:0006355|GO:0043565
Aip05g00874 321 PANTHER GATA TRANSCRIPTION FACTOR 1 305 - -
Aip05g00874 321 Pfam GATA zinc finger 237 271 IPR000679 GO:0006355|GO:0043565
Aip05g00874 321 PANTHER GATA TRANSCRIPTION FACTOR 1 305 - -
Aip05g00874 321 MobiDBLite consensus disorder prediction 77 98 - -
Aip05g00874 321 MobiDBLite consensus disorder prediction 170 236 - -
Aip05g00874 321 CDD ZnF_GATA 236 284 IPR000679 GO:0006355|GO:0043565
Aip05g00874 321 ProSitePatterns GATA-type zinc finger domain. 237 262 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00874 Aip-Chr5 11941880 11943215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00874 4 303 C2C2-Gata Transcription Factor Family AT5G66320 46.064 3.85e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aip05g00874 GATA 4.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00874 - - aprc:113869559 344.739