LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip05g00872	ATGGGTCGTGGAAAGATTGAGATAAAGCTCATCGAGAACCCAACCAACAGGCAAGTTACATACTCAAAGAGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTCTCACTCATCATGTTCTCCAAGAACAACAAGATGCATGAGTACATCAGCCCTGGCCTTAGCACAAAGAAGATCATTGATCAGTATCAGAAAACTTTGGGAGATATCGATCTCTGGCATTCTCACTATGAGAAAATGCTTGAGAATTTGAAGAAACTCAAAGATATTAATAATAAGCTCAGAAGACAGATCAGGAATCGGATAGGGGAGGGTAGCTTGGATATGGATGATATGAGCTTTCAGCAACTGCGTACTCTTGAAGAGGATATGGTTTCTGCCATTGCCAAAATACGCGAACGAAAGTTCCATGTGATCAGAACTCGGACTGAAACCTGTAGGAAAAAGGTGAGAAGCTTGGAGCAGATGAACGGAAATCTCCTTCTTGAACTTGAAAAGTGTGTGATCCATCCACAATTTATATTACACGATGAAGGAGAGCAGGAATCAGCAGTTGCACTGGCCAATGGAGCCTCCAACCTCTATGCATTCTGCCACCACCATACTCATCTCAATCACCACCTTCATAACCACCATGCACCACCGGAACCCTTCAAAAACGATGATCTCCGCCTCGCTTAA	705	0.4326	MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLSTKKIIDQYQKTLGDIDLWHSHYEKMLENLKKLKDINNKLRRQIRNRIGEGSLDMDDMSFQQLRTLEEDMVSAIAKIRERKFHVIRTRTETCRKKVRSLEQMNGNLLLELEKCVIHPQFILHDEGEQESAVALANGASNLYAFCHHHTHLNHHLHNHHAPPEPFKNDDLRLA	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip05g00872	234	Coils	Coil	85	105	-	-
	Aip05g00872	234	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	11	57	IPR002100	GO:0003677\|GO:0046983
	Aip05g00872	234	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Aip05g00872	234	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Aip05g00872	234	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Aip05g00872	234	Gene3D	-	13	79	IPR036879	GO:0003677\|GO:0046983
	Aip05g00872	234	SUPERFAMILY	SRF-like	2	96	IPR036879	GO:0003677\|GO:0046983
	Aip05g00872	234	MobiDBLite	consensus disorder prediction	215	234	-	-
	Aip05g00872	234	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Aip05g00872	234	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	233	-	-
	Aip05g00872	234	PANTHER	FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1	1	233	-	-
	Aip05g00872	234	MobiDBLite	consensus disorder prediction	217	234	-	-
	Aip05g00872	234	ProSiteProfiles	K-box domain profile.	85	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aip05g00872	234	CDD	MADS_MEF2_like	2	77	IPR033896	GO:0000977\|GO:0045944
	Aip05g00872	234	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Aip05g00872	234	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Aip05g00872	234	Pfam	K-box region	82	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip05g00872	Aip-Chr5	11894595	11896433	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip05g00872	1	229	MADS-box Gene Family	AT3G54340	47.826	2.69e-67	206

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Aip05g00872		K-box	1.1e-17	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip05g00872	K09264		-	gmx:100784496	380.178

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip05g00872	05	11894595	11896433	Aip05g00872	05	11894595	11896433	ECH
	Aip05g00872	05	11894595	11896433	Aip07g02480	07	103828071	103832741	ECH