Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00858 ATGGCTTGTAGGAGATTGGCCCTTATCATTGTTTCTGCTGTTATGCTTTCTATTACATTTGCTGGATTCTGTGCAATTCTATGGAACCACCAAATGATAGCCTTATGCGCAGATCCCCAGTTGGCTGAAGGTTTGGAATCTCTTATAACTAATGTCATGTGGAGGAACTTGATCATACAGGCTATCTATCAAGTGACCATTCTTCTCATTCTTAATTTCGGTTGGCAAAGTATTAATCTAGGTGATGATCAAGATTCTAAATCTCACTCCTTACAAGTGAAGAATACTTTAATATTCAACACATTCGTTCTATGCCAAATATTTAACGAGTTTAATGCTAGAAAAATAGATCAAATGAATGTCTTCAAGGGAGTGACTAAATCGTCTCTTGGGAACTGTTGGAGTGACATTTGTGCTTCAGCTTTAGTCAAGATAGTAGCAGCATTGCACCCCAACACAACTGGGACAACCACAACATTAAGCCCTACAATAGTGATCAAGTTTGTAGCAAAATGGAGAATTCGAATCCAATGGAATTGA 540 0.3796 MACRRLALIIVSAVMLSITFAGFCAILWNHQMIALCADPQLAEGLESLITNVMWRNLIIQAIYQVTILLILNFGWQSINLGDDQDSKSHSLQVKNTLIFNTFVLCQIFNEFNARKIDQMNVFKGVTKSSLGNCWSDICASALVKIVAALHPNTTGTTTTLSPTIVIKFVAKWRIRIQWN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00858 179 Gene3D - 34 172 - -
Aip05g00858 179 Pfam Cation transporting ATPase, C-terminus 46 130 IPR006068 -
Aip05g00858 179 PANTHER CALCIUM-TRANSPORTING ATPASE 46 140 - -
Aip05g00858 179 PANTHER CATION TRANSPORTING ATPASE 46 140 - -
Aip05g00858 179 SUPERFAMILY Calcium ATPase, transmembrane domain M 30 137 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00858 Aip-Chr5 11700931 11704421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00858 46 130 Primary Pumps ATPases AT3G21180 62.353 4.63e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00858 K01537 - gmx:100802659 127.872