Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00857 ATGGCAGGTTTGTTCTCACTAGGCGGTGGTAGTAGTAGTAGTAGTGGTAGAGGAGGGAGAGGGAACACAAACCAACAACAACAACACGACCAACACCAACAACACGCGGAAATTCCTCCCTCCGACACCTTTTACTGGTACAAGAATGAAGACGTTTCCTCGTACCGAGGTGGCTTGGAGCTGTGGAACCATCATCATCATCATCACCAACCGGAACACGACCTCATACCTCAAGCAAGGCCTCTCTTCCACCAAGATCTTTACAGCTCCGCGGCTGCTCTAGGAGTGGGTCCAACCACTGTGTCCGACGATCAGTCACCCTCGAGATCGGCCTTCCTGGTGACGGCGTCGGCCGTGGGGAGCGGAGCAGCAAGCGGAGCAGGAAGTGGAGCAGGTGGGATTAGCTGCCAGGACTGCGGGAACCAGGCGAAGAAAGATTGCCCTCACATGCGGTGCAGGACATGCTGCAAGAGCCGTGGCTTCGATTGCCAAACCCATGTCAAGAGCACTTGGGTTCCCGCTTCCAAGCGCCGCGAGAGGCAGCAGCAACTCGCCTCTATCCAACAACAACAGCTTCTTGCTGCTGATGTTCCCAAGCGCCAAAGAGATCATGCCTCTAGTACTCGTTTACCCACAAACCCTTCTCCTTCAGCCTCAGCTTCAGGGATGGAGAATTTTCCTGCAGTAGTGAGCTCTCCAGCTGAATTCAGATGCGTACGTGTGAGCGGAATCGACGACACAGAAGACGAGTATGCATATCAAACGGCAGTCAACATTGGAGGACACGTCTTCAAAGGGATCCTCTATGACCAGGGTCCAGATCACGCAACCACCACCACCACCAACAGCAGCAGCTACGTCGCCGGAGACACCTCCTCCACCGGCGCTGCTGCTCATCACCCTAATCTCAACCTCATTGCTCCCAACACCAACACCACAACTTCAGCTCTCGTCTCCGCTGCACACACAACGCAGCAGCTCGTAGATCCTTCATCCATGTATCCACCTCCTCCTCTCAGCACCTTCATGGCTGGTAGTAGCGGTACGCAATTCTTCCCTCATCCAAGATCTTGA 1074 0.5456 MAGLFSLGGGSSSSSGRGGRGNTNQQQQHDQHQQHAEIPPSDTFYWYKNEDVSSYRGGLELWNHHHHHHQPEHDLIPQARPLFHQDLYSSAAALGVGPTTVSDDQSPSRSAFLVTASAVGSGAASGAGSGAGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLASIQQQQLLAADVPKRQRDHASSTRLPTNPSPSASASGMENFPAVVSSPAEFRCVRVSGIDDTEDEYAYQTAVNIGGHVFKGILYDQGPDHATTTTTNSSSYVAGDTSSTGAAAHHPNLNLIAPNTNTTTSALVSAAHTTQQLVDPSSMYPPPPLSTFMAGSSGTQFFPHPRS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00857 357 MobiDBLite consensus disorder prediction 1 41 - -
Aip05g00857 357 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 355 IPR007818 GO:0003700|GO:0006355
Aip05g00857 357 MobiDBLite consensus disorder prediction 174 195 - -
Aip05g00857 357 MobiDBLite consensus disorder prediction 207 224 - -
Aip05g00857 357 MobiDBLite consensus disorder prediction 7 38 - -
Aip05g00857 357 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 226 273 IPR006511 -
Aip05g00857 357 Pfam Domain of unknown function (DUF702) 133 274 - -
Aip05g00857 357 PANTHER PROTEIN SHORT INTERNODES 1 355 - -
Aip05g00857 357 MobiDBLite consensus disorder prediction 174 224 - -
Aip05g00857 357 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 135 177 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00857 Aip-Chr5 11671002 11673587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00857 1 345 C2H2 Transcription Factor Family AT5G66350 43.611 1.04e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Aip05g00857 DUF702 1.8e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00857 - - ahf:112720334 352.058