Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00836 ATGGCAGTGATCCAAGCCAACAACAACAATGATGATAAAATTCCAAAAATAAAGAGGAGGATAAAACTACAACTGATAGATGATATGAGTTCAATGAAAGCTACATTTAAGAAGAGATGTGCCGGGTTGTTGAAAAAATTGGAGCAGATTGCCATCCTTTGTGACATTCAGGCTTGTATTGCCATCTTTGGGGACAAGAGTCCTACGGTGTGGCCGTCGGTGGAGGAGGCTAAAGTGATTGTGGAGAAGTTCGAGGAGACTCCAGAGCCGGAGCGGTTAAGCAGAATGGCAACTCATCAATAG 303 0.4356 MAVIQANNNNDDKIPKIKRRIKLQLIDDMSSMKATFKKRCAGLLKKLEQIAILCDIQACIAIFGDKSPTVWPSVEEAKVIVEKFEETPEPERLSRMATHQ 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00836 100 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 18 95 - -
Aip05g00836 100 SMART madsneu2 16 73 IPR002100 GO:0003677|GO:0046983
Aip05g00836 100 Gene3D - 28 100 IPR036879 GO:0003677|GO:0046983
Aip05g00836 100 CDD MADS_SRF_like 18 92 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aip05g00836 100 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Aip05g00836 100 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Aip05g00836 100 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Aip05g00836 100 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 65 IPR002100 GO:0003677|GO:0046983
Aip05g00836 100 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 95 - -
Aip05g00836 100 ProSiteProfiles MADS-box domain profile. 16 67 IPR002100 GO:0003677|GO:0046983
Aip05g00836 100 SUPERFAMILY SRF-like 18 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00836 Aip-Chr5 11197211 11198370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00836 17 100 Type I MADS-box Gene Family AT1G31640 42.353 9.90e-19 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip05g00836 SRF-TF 9.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00836 - - adu:107487931 154.066