Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00835 ATGGATAATAACGGTCTTAACTTGTTTTCCGCTCCCCAAGAAAGGAGGGTGTCATTTGCAGAGCTAGCAAGGCAGTATGAGATGGCAGCCAACAACAATGATGATGATATCCCGAAAATGAAGAGGAGGGTGAAACTACAACTGATAGATGATATGAATTCAAGGAAAGCTACATTCAGGAAGAGACGTGCCGGATTGTTGAAGAAGTTGGAGCAGCTCGCCATCCTTTGTGACATTCAGGCTTGTATTGCCATCTTTGGTCCAGGTGACAAGAGTCCTACGGTGTGGCCATCAGTGGAGGAGGCTAAAGAGATCATGGAGAGGTTTGAGGAGATTCCGGAGCCAGAGCGGTCGAGCAGAATGGTAACTCATCAGGAGTACAGGAAACAGAAGGTGATTTGGATGGAGAAGCAACTTGAGAAGCTCAAGAAACTTAACGATCAGAAAGAGATGGCCATCTTCATGCATCAAATCTATAACGAACATAGGCCTGTAACTGATTTTAGCGATGATGAGTTGGACCGTTTTCTCACCTATGTTGACGACAAGTTGAAGGCGGTTAGAAACAACATAATAAGAACCCACCGCTCTGAAGTGTCAATTTCGTTGCAGCCACCGCCGGCGCCGCCATCAGCAGTGGCAGTGCAGCCACTGATTATTTTTGGTGAAGTTGATAGCAGTGTGCAAGATGAACTGTTATTTAATGCAGAGCAACAACAGAAGAATTTAGAAGATGTTGTTCCTAATGATGAACCGGATGATGATTTTTTTGGAGGATTATTCTTTGAAGATGAGAGTAACGGGTCGGTTCTGTTTCCTGTTGGTGATGAGCATGTGTTGGTGGTTCCACCGGCTGAAGCTAATGAAGAATTATTTGGGTTTGGAGATTTCGATGATTCAGTGGATTTTGGTGATCTTGACAATTTTGGTGACCTCACTGTTGGAACTGATGATGATGATGACGATGATGATTTCTTAATTGATGAGTTATTATTGCCTAATCAGGGCAATGCCGCCGGAAATACTAGTAATGATAATCATAAAGGGCTGTGGTAG 1056 0.4375 MDNNGLNLFSAPQERRVSFAELARQYEMAANNNDDDIPKMKRRVKLQLIDDMNSRKATFRKRRAGLLKKLEQLAILCDIQACIAIFGPGDKSPTVWPSVEEAKEIMERFEEIPEPERSSRMVTHQEYRKQKVIWMEKQLEKLKKLNDQKEMAIFMHQIYNEHRPVTDFSDDELDRFLTYVDDKLKAVRNNIIRTHRSEVSISLQPPPAPPSAVAVQPLIIFGEVDSSVQDELLFNAEQQQKNLEDVVPNDEPDDDFFGGLFFEDESNGSVLFPVGDEHVLVVPPAEANEELFGFGDFDDSVDFGDLDNFGDLTVGTDDDDDDDDFLIDELLLPNQGNAAGNTSNDNHKGLW 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00835 351 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 49 91 IPR002100 GO:0003677|GO:0046983
Aip05g00835 351 PRINTS MADS domain signature 41 61 IPR002100 GO:0003677|GO:0046983
Aip05g00835 351 PRINTS MADS domain signature 61 76 IPR002100 GO:0003677|GO:0046983
Aip05g00835 351 PRINTS MADS domain signature 76 97 IPR002100 GO:0003677|GO:0046983
Aip05g00835 351 Gene3D - 51 133 IPR036879 GO:0003677|GO:0046983
Aip05g00835 351 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 41 238 - -
Aip05g00835 351 ProSiteProfiles MADS-box domain profile. 39 91 IPR002100 GO:0003677|GO:0046983
Aip05g00835 351 PANTHER SERUM RESPONSE FACTOR HOMOLOG 41 238 - -
Aip05g00835 351 SUPERFAMILY SRF-like 41 131 IPR036879 GO:0003677|GO:0046983
Aip05g00835 351 SMART madsneu2 39 98 IPR002100 GO:0003677|GO:0046983
Aip05g00835 351 CDD MADS_SRF_like 40 122 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00835 Aip-Chr5 11186672 11188073 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00835 40 155 Type I MADS-box Gene Family AT1G31640 42.241 1.01e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip05g00835 SRF-TF 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00835 - - adu:107487931 597.816