Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00833 ATGAGTTCAAGGAAAGCTACATTTAAGAAGAGATGTGCCGGGTTGTTGAAAAAGTTGGAGCAGATTGCCATCCTTTGTGACATTCAGGCTTGTATTGCCATCTTTGGGGACAAGAGTCCTACGGTGTGGCCGTCGGTGGAGGAGGCTAAAGTGATTGTGAAGAAGTTCGAGGAGATTCCAAAGCCGAAGCAGTTGAGCAGAATGGCAACTCATCAGGAGTACAGGCAACAGAAGGTGATTTGGATGGAGAAGCAACTTGAGAAGCTCAAGAAACTTAACAATCAGAAAGAGATGGACATCTTCATGCATTAA 312 0.4487 MSSRKATFKKRCAGLLKKLEQIAILCDIQACIAIFGDKSPTVWPSVEEAKVIVKKFEEIPKPKQLSRMATHQEYRQQKVIWMEKQLEKLKKLNNQKEMDIFMH 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00833 103 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 37 IPR002100 GO:0003677|GO:0046983
Aip05g00833 103 Gene3D - 1 101 IPR036879 GO:0003677|GO:0046983
Aip05g00833 103 SMART madsneu2 1 45 IPR002100 GO:0003677|GO:0046983
Aip05g00833 103 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 103 - -
Aip05g00833 103 ProSiteProfiles MADS-box domain profile. 1 39 IPR002100 GO:0003677|GO:0046983
Aip05g00833 103 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 2 103 - -
Aip05g00833 103 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00833 Aip-Chr5 11146970 11148144 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00833 4 102 Type I MADS-box Gene Family AT1G31640 36.000 2.48e-20 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip05g00833 SRF-TF 5.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00833 - - adu:107487931 167.162