Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aip05g00831 | ATGGATAATAACGGTCTTAACCTGTTTTCCGCTCCCCAAGAAAGGAGGGTGTCATTTGCAGAGCTAGCAAGGCAGTATGAAATGGCAACCAACAACAATGATGATGATATCCCGAAAATGAAGAGGAGGGTGAAACTACAACTGATAGATGATATGAATTCAAGGAAAGCTACATTCAGAAAAAGACGTGCGGGATTGTTGAAGAAGTTGGAGCAACTCGCCATCCTTTGTGACATTCAGGCTTGTATTGCCATCTTTAGTCCAGGAGACAAGAGTCCTACTGTGTGGCCGTCAGTGGAGGAGGCTAAAGAGATCGTGGAGAGATTTGAGGAGATCCCGGAGCCAGAGCGGTCGAGCAGAATGGTAACTCATCCGGAGTACAGGAAACAGAAGGTGATTTGGATGGAGAAGCAACTTGAGAAGCTCAAGAAACTTAACGATCAGAAAGAGATGGACATCTTCATGCATCAAATCTATAACGAACATAGGCCTGTAACTGATTTTAGCGATGATGAGTTGGACCGTTTTCTCACCTATGTTGACGACAAGTTAAAGGCGGTTAGAAACAGCATAATAAGAACCCATCGCTCTAAAGTGTCAATTTCGTCGCAGCCACTGCCGGCGCCGCCATCAGCAGTGGCGGTGCAGCCACTGATTATTTCTGGATTGTTCTTTGAAGATGAGAGTAACGGGTCGGTTCTGTTTCCTGTTGGTGATGAGAATGTGTTGGTGGTTCCACCGGCTGAAGCTAATGAAGAATTATTTGGGTTTGGAGATTTCGATGATTCAGTGGATTTTGGTGATCTTGATAATTTTGGTGACCTCACTGTTGGAACTGATGATAATGAAGACGATGATGATTTCTTAATTGATGAGTTATTATTGCCTAATCAGGGCAATGCCGCTGGAAATACTACACCACCATCACCCACCACCTACCACCTACCACCTACCACCATCACCACCACCACCACTACCACCACCACCACCACCATTATCAGAACTCAAAATCAGAACAACCACCACCACCACCACCACCACCATCATCATCATCATCATCATCATCATCAGAACTCAGAATCAGAACAACCACCACCACCCCCCCCATCCACTGCCACTCCATCACCAGCATCCATCACACCAAAACATCAAAAAATCCAGAAAAATCAACATCAGAAAATCAGACAAATCAAAACATCAGAAAATCAACATCATCATCGTCATCCTCATCAAAATCCAGAATTCAGAAAATCCAGAAAAATCAAACAACAATATTACTCAGAATCAGAAAATCATCATCATCATCAAGAACCCAGAATAAGAAGAAGAAGCGGCGGGCGGTGGACAACGGCTCGGCGGTGGTGTCGGCGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACGGGCGGCGGGGATTTGGACCCTGAGGTCGACGAGAGTGGTTTCGGTTCAATCAGGAATGAGGAGAATAAGAATGTTGCTGTTTTGACAACTAAAGCTAAGGTTTATTATGATGCACTGGATAGAAATGAACCATTGGCTTTGGACATGGGAAGCATGGAGAAGGATCAGATTAGCATTTTTTTAAGGAACAACTTCTCTGACAAAGCTCAAGGTGTGAAATCAGCTGCAACGTGCTCCGGCTGA | 2052 | 0.4235 | MDNNGLNLFSAPQERRVSFAELARQYEMATNNNDDDIPKMKRRVKLQLIDDMNSRKATFRKRRAGLLKKLEQLAILCDIQACIAIFSPGDKSPTVWPSVEEAKEIVERFEEIPEPERSSRMVTHPEYRKQKVIWMEKQLEKLKKLNDQKEMDIFMHQIYNEHRPVTDFSDDELDRFLTYVDDKLKAVRNSIIRTHRSKVSISSQPLPAPPSAVAVQPLIISGLFFEDESNGSVLFPVGDENVLVVPPAEANEELFGFGDFDDSVDFGDLDNFGDLTVGTDDNEDDDDFLIDELLLPNQGNAAGNTTPPSPTTYHLPPTTITTTTTTTTTTTIIRTQNQNNHHHHHHHHHHHHHHHHQNSESEQPPPPPPSTATPSPASITPKHQKIQKNQHQKIRQIKTSENQHHHRHPHQNPEFRKSRKIKQQYYSESENHHHHQEPRIRRRSGGRWTTARRWCRREEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEETGGGDLDPEVDESGFGSIRNEENKNVAVLTTKAKVYYDALDRNEPLALDMGSMEKDQISIFLRNNFSDKAQGVKSAATCSG | 683 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aip05g00831 | 683 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 49 | 91 | IPR002100 | GO:0003677|GO:0046983 | |
Aip05g00831 | 683 | MobiDBLite | consensus disorder prediction | 400 | 415 | - | - | |
Aip05g00831 | 683 | Gene3D | - | 51 | 132 | IPR036879 | GO:0003677|GO:0046983 | |
Aip05g00831 | 683 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 | 41 | 357 | - | - | |
Aip05g00831 | 683 | Coils | Coil | 451 | 604 | - | - | |
Aip05g00831 | 683 | SUPERFAMILY | SRF-like | 41 | 130 | IPR036879 | GO:0003677|GO:0046983 | |
Aip05g00831 | 683 | MobiDBLite | consensus disorder prediction | 338 | 627 | - | - | |
Aip05g00831 | 683 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 41 | 357 | - | - | |
Aip05g00831 | 683 | CDD | MADS_SRF_like | 40 | 122 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Aip05g00831 | 683 | SMART | madsneu2 | 39 | 98 | IPR002100 | GO:0003677|GO:0046983 | |
Aip05g00831 | 683 | PRINTS | MADS domain signature | 76 | 97 | IPR002100 | GO:0003677|GO:0046983 | |
Aip05g00831 | 683 | PRINTS | MADS domain signature | 41 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Aip05g00831 | 683 | PRINTS | MADS domain signature | 61 | 76 | IPR002100 | GO:0003677|GO:0046983 | |
Aip05g00831 | 683 | ProSiteProfiles | MADS-box domain profile. | 39 | 91 | IPR002100 | GO:0003677|GO:0046983 | |
Aip05g00831 | 683 | MobiDBLite | consensus disorder prediction | 460 | 609 | - | - | |
Aip05g00831 | 683 | MobiDBLite | consensus disorder prediction | 296 | 325 | - | - | |
Aip05g00831 | 683 | MobiDBLite | consensus disorder prediction | 338 | 356 | - | - | |
Aip05g00831 | 683 | MobiDBLite | consensus disorder prediction | 298 | 325 | - | - | |
Aip05g00831 | 683 | MobiDBLite | consensus disorder prediction | 361 | 375 | - | - | |
Aip05g00831 | 683 | MobiDBLite | consensus disorder prediction | 416 | 435 | - | - | |
Aip05g00831 | 683 | MobiDBLite | consensus disorder prediction | 436 | 450 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aip05g00831 | Aip-Chr5 | 11108944 | 11128088 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aip05g00831 | 40 | 226 | Type I MADS-box Gene Family | AT1G65300 | 31.937 | 5.34e-25 | 103 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Aip05g00831 | SRF-TF | 8.7e-15 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aip05g00831 | - | - | adu:107487931 | 504.982 |