Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00831 ATGGATAATAACGGTCTTAACCTGTTTTCCGCTCCCCAAGAAAGGAGGGTGTCATTTGCAGAGCTAGCAAGGCAGTATGAAATGGCAACCAACAACAATGATGATGATATCCCGAAAATGAAGAGGAGGGTGAAACTACAACTGATAGATGATATGAATTCAAGGAAAGCTACATTCAGAAAAAGACGTGCGGGATTGTTGAAGAAGTTGGAGCAACTCGCCATCCTTTGTGACATTCAGGCTTGTATTGCCATCTTTAGTCCAGGAGACAAGAGTCCTACTGTGTGGCCGTCAGTGGAGGAGGCTAAAGAGATCGTGGAGAGATTTGAGGAGATCCCGGAGCCAGAGCGGTCGAGCAGAATGGTAACTCATCCGGAGTACAGGAAACAGAAGGTGATTTGGATGGAGAAGCAACTTGAGAAGCTCAAGAAACTTAACGATCAGAAAGAGATGGACATCTTCATGCATCAAATCTATAACGAACATAGGCCTGTAACTGATTTTAGCGATGATGAGTTGGACCGTTTTCTCACCTATGTTGACGACAAGTTAAAGGCGGTTAGAAACAGCATAATAAGAACCCATCGCTCTAAAGTGTCAATTTCGTCGCAGCCACTGCCGGCGCCGCCATCAGCAGTGGCGGTGCAGCCACTGATTATTTCTGGATTGTTCTTTGAAGATGAGAGTAACGGGTCGGTTCTGTTTCCTGTTGGTGATGAGAATGTGTTGGTGGTTCCACCGGCTGAAGCTAATGAAGAATTATTTGGGTTTGGAGATTTCGATGATTCAGTGGATTTTGGTGATCTTGATAATTTTGGTGACCTCACTGTTGGAACTGATGATAATGAAGACGATGATGATTTCTTAATTGATGAGTTATTATTGCCTAATCAGGGCAATGCCGCTGGAAATACTACACCACCATCACCCACCACCTACCACCTACCACCTACCACCATCACCACCACCACCACTACCACCACCACCACCACCATTATCAGAACTCAAAATCAGAACAACCACCACCACCACCACCACCACCATCATCATCATCATCATCATCATCATCAGAACTCAGAATCAGAACAACCACCACCACCCCCCCCATCCACTGCCACTCCATCACCAGCATCCATCACACCAAAACATCAAAAAATCCAGAAAAATCAACATCAGAAAATCAGACAAATCAAAACATCAGAAAATCAACATCATCATCGTCATCCTCATCAAAATCCAGAATTCAGAAAATCCAGAAAAATCAAACAACAATATTACTCAGAATCAGAAAATCATCATCATCATCAAGAACCCAGAATAAGAAGAAGAAGCGGCGGGCGGTGGACAACGGCTCGGCGGTGGTGTCGGCGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACGGGCGGCGGGGATTTGGACCCTGAGGTCGACGAGAGTGGTTTCGGTTCAATCAGGAATGAGGAGAATAAGAATGTTGCTGTTTTGACAACTAAAGCTAAGGTTTATTATGATGCACTGGATAGAAATGAACCATTGGCTTTGGACATGGGAAGCATGGAGAAGGATCAGATTAGCATTTTTTTAAGGAACAACTTCTCTGACAAAGCTCAAGGTGTGAAATCAGCTGCAACGTGCTCCGGCTGA 2052 0.4235 MDNNGLNLFSAPQERRVSFAELARQYEMATNNNDDDIPKMKRRVKLQLIDDMNSRKATFRKRRAGLLKKLEQLAILCDIQACIAIFSPGDKSPTVWPSVEEAKEIVERFEEIPEPERSSRMVTHPEYRKQKVIWMEKQLEKLKKLNDQKEMDIFMHQIYNEHRPVTDFSDDELDRFLTYVDDKLKAVRNSIIRTHRSKVSISSQPLPAPPSAVAVQPLIISGLFFEDESNGSVLFPVGDENVLVVPPAEANEELFGFGDFDDSVDFGDLDNFGDLTVGTDDNEDDDDFLIDELLLPNQGNAAGNTTPPSPTTYHLPPTTITTTTTTTTTTTIIRTQNQNNHHHHHHHHHHHHHHHHQNSESEQPPPPPPSTATPSPASITPKHQKIQKNQHQKIRQIKTSENQHHHRHPHQNPEFRKSRKIKQQYYSESENHHHHQEPRIRRRSGGRWTTARRWCRREEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEETGGGDLDPEVDESGFGSIRNEENKNVAVLTTKAKVYYDALDRNEPLALDMGSMEKDQISIFLRNNFSDKAQGVKSAATCSG 683
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00831 683 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 49 91 IPR002100 GO:0003677|GO:0046983
Aip05g00831 683 MobiDBLite consensus disorder prediction 400 415 - -
Aip05g00831 683 Gene3D - 51 132 IPR036879 GO:0003677|GO:0046983
Aip05g00831 683 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 41 357 - -
Aip05g00831 683 Coils Coil 451 604 - -
Aip05g00831 683 SUPERFAMILY SRF-like 41 130 IPR036879 GO:0003677|GO:0046983
Aip05g00831 683 MobiDBLite consensus disorder prediction 338 627 - -
Aip05g00831 683 PANTHER SERUM RESPONSE FACTOR HOMOLOG 41 357 - -
Aip05g00831 683 CDD MADS_SRF_like 40 122 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aip05g00831 683 SMART madsneu2 39 98 IPR002100 GO:0003677|GO:0046983
Aip05g00831 683 PRINTS MADS domain signature 76 97 IPR002100 GO:0003677|GO:0046983
Aip05g00831 683 PRINTS MADS domain signature 41 61 IPR002100 GO:0003677|GO:0046983
Aip05g00831 683 PRINTS MADS domain signature 61 76 IPR002100 GO:0003677|GO:0046983
Aip05g00831 683 ProSiteProfiles MADS-box domain profile. 39 91 IPR002100 GO:0003677|GO:0046983
Aip05g00831 683 MobiDBLite consensus disorder prediction 460 609 - -
Aip05g00831 683 MobiDBLite consensus disorder prediction 296 325 - -
Aip05g00831 683 MobiDBLite consensus disorder prediction 338 356 - -
Aip05g00831 683 MobiDBLite consensus disorder prediction 298 325 - -
Aip05g00831 683 MobiDBLite consensus disorder prediction 361 375 - -
Aip05g00831 683 MobiDBLite consensus disorder prediction 416 435 - -
Aip05g00831 683 MobiDBLite consensus disorder prediction 436 450 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aip05g00831 Aip-Chr5 11108944 11128088 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00831 40 226 Type I MADS-box Gene Family AT1G65300 31.937 5.34e-25 103
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip05g00831 SRF-TF 8.7e-15 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00831 - - adu:107487931 504.982