Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00824 ATGAATGATCTGATGACGAAATCGTTCTTAAGTTATGTTGAACTGAAGAAACAGGTCATGAAGGACCTTGAAAATGAACGTGATATTGAAGCAGGGCAACTCAACCCCACACAACTAGAAGACCCTAATCTCACTCAGTTCTTCCAAGAAGTGGATGCAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTATTTGATCTTCAGCAACTGAATGAAGAAGCAAAGTCCACACACAGTGCAAAAGTCCTCCGTGGACTAAGAGACCGCATGGAATCTGACATGGTTGCGGTGCTTCGCAAGGCCAAGATCATCAAGGCAAGGCTTGAGGTCCTGGACCAATCCAACATAGCCAATAGAAATTTATCAGAGTCCTATAAAGAGGGTACACCAATTGATAGGACAAGGAGTTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGAGTTTCAGTCCTTGAGGGACAAGATACTGTCTGATTACAAGGAAGATTTGAAGAGAAGGTACTACAGTGCGACCGGCGAGGTTCCGAGTGAAGAGGTCATGGACAAGATGATCTCAGGGAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACAGATGCTGACATGGGAACTCAGGTTAGACATGAGGCTGTGATGGATATTCAGAGGAGTTTGAACAAGCTTCACCAAGTGTTTCTTGATATGGCTATTCTGGTTGAGACACAAGGGGAGAAATTGGACAATATTGAAGATAATATGGCCAGTGCTGGTAACTACATCCATGGTGGAACTAATAGTCTTTACTATGCCAATCAGATGAAGAAGAAGAACCATAAATGGTGGTGCTGGGTTTGTGCTGTTGGGTTGATTGTGCTGTTGGTGTGCTTCATAGCAATGTTGACTTCTTGA 903 0.433 MNDLMTKSFLSYVELKKQVMKDLENERDIEAGQLNPTQLEDPNLTQFFQEVDAIKVEMEEITNLLFDLQQLNEEAKSTHSAKVLRGLRDRMESDMVAVLRKAKIIKARLEVLDQSNIANRNLSESYKEGTPIDRTRSSVTNGLRVKLRDMMNEFQSLRDKILSDYKEDLKRRYYSATGEVPSEEVMDKMISGSLKVEFLAGKTDADMGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKLDNIEDNMASAGNYIHGGTNSLYYANQMKKKNHKWWCWVCAVGLIVLLVCFIAMLTS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00824 300 Pfam SNARE domain 242 292 IPR000727 -
Aip05g00824 300 PANTHER SYNTAXIN-112 3 296 - -
Aip05g00824 300 Coils Coil 54 78 - -
Aip05g00824 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Aip05g00824 300 SMART SynN_4 39 166 IPR006011 GO:0016020
Aip05g00824 300 SMART tSNARE_6 201 268 IPR000727 -
Aip05g00824 300 PANTHER SYNTAXIN 3 296 IPR045242 -
Aip05g00824 300 SUPERFAMILY t-snare proteins 41 261 IPR010989 GO:0016020|GO:0016192
Aip05g00824 300 Pfam Syntaxin 46 241 IPR006011 GO:0016020
Aip05g00824 300 CDD SNARE_syntaxin1-like 210 265 - -
Aip05g00824 300 Gene3D - 40 170 - -
Aip05g00824 300 CDD SynN 47 194 IPR006011 GO:0016020
Aip05g00824 300 Gene3D - 202 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00824 Aip-Chr5 11021075 11021989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00824 1 300 SNARE and Associated Proteins AT2G18260 58.958 4.53e-131 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00824 K08486 - gmx:112997615 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00824 05 11021075 11021989 Aip05g00824 05 11021075 11021989 ECH