Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00815 ATGGGAACTGATAGTGGTGAAGAAGCGGAGTCATTACCAAATCCGCGCTCCTTCAAGGTGCATAGTAAACTGTGCGTGGAACTCATGAAAATACTAGCAAGAGTTTTGAGGATATTTCCGGCAATAGAGGAGGCTCGGCCTCGAAGCTCGTCAGGAATAGAGTCTCTGTGTTTGCTGAACAATGCAATCGATAAAGCCAAACTACTACTGCAGCATTGCTCTGATTGCAGCAAACTCTACCTGGCTCTGACAGGGAATGCAATACTTCAAAGATGCCAAAAGGCAAGAAAATCATTATTGCAAAGCTTGATCCAGATTCAGGGTATGGTTCCAGTTATTTTAGCTGCAGAGGTTTCTGGAATAATCGATGATCTTGAGTGTGCCACATTTGTCTTAGACTCTGCCGAAGAAGAGGCTGGAAAGGTTGTTAAGGAGTTGCTTGAGCAAGATACAGATACAATGGACGGTTCTGCAGTAAAAGCTCTTCAGTTTGCAGCACCAAGACTTAACATTACATCCCAAAAGGCCATCTTAATAGAGAAACGATCTATTAAGAAGTTGCGAGATAAAATTGGAACCAATGACCAGAAAAAGAAGGCCATTTTGAAATTTCTTTGGTATATACTGGACAAGCATGGAAATCACATCATTGGGGAAGAAATGGAGAAGGTCTATTCCAATAATGATGAACCAATGGCCACTGAGAACTCTAGTCGCCATTCTCAACAAAGGCATCAACCTGAGTCTGATCCATGCTTGCACTATGACCAATATAGAAATCAGACTGATGAGTTTGGTAGAGCTACACCCCTTGAGGAGTATAAGTGTCCAATATCGTCAAGATTGATGTATGATCCTGTTGTCATTGCATCTGGTGTTACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAATGATACATGCCCGAAAACTAAAAAGAAACTAGTTCATATGGGAATGACTCCTAATATTGCTATGAAAGACTTAATATCAAAATGGTGCAGAAACAATGGAGTCTCCATTTCTGACCCAAACAGGCTAGTAGGAGGTTTTCACTCTTGGGAAGCTTCTATGACTTCCATCAAGAGTTTTGGAAGTTACATAAATAATTTTAACTTGCCACTGGATCTTAGTAACATGTCTCTTGGATCATTGGATACTAGTTACAATTCAGATGTCTTGCATTCTAAGACCACTCGTGAGTCAAATTTGAGGTCAATAATGACTAATGATGATTCTCACAAACGTCAAGCTCAAGAACAGATACGTGAAGCAAATTTGCAGCTCTTGTCCAAACTGCATGATCTCCAATGGGATTCTCAATGTCAGGTCATTGAAGATGTGAAAGAAAATTTGAAAAGCAATTACCAAGCTTTTTCTTCTGTATCACCTCAGAATTTCACTGAACCACTCATCAGATTTCTGAACAGTGCTTATGATCTGCATGATGTAAAAGCTCTCAGAGCTGGAACTCAGCTGCTGTTGGAATTTGTCAACAACTGCAGAAATGGTCTGAGTAATTTCAGTGAAGATGTATTCACACTGTTGGCCAATTTTCTTGATTCAGAAGTGACAGGAGAAGCTCTTGCCGTAATGGAAGAACTCTCTAGTTATTTGCATGGAAAAGCTAAAATAGCAGCATCCAATGCACTCACTTCTATTCTAAATATACTTAATTCTGATAACAAAGAGTTCCAACGACAAGCCATTGTAATATTGTATAATTTATCCTTCAATGGTGAAGTTTGTCCCCTCATGCTATCTCTCAAGTGCATCCCAACGTTGCTTCCATTTTTCAAAGACAGGTCCCTTTTGAGATACTGTATAGTTATATTGAAAAATCTTTGTGACACTGAAGAGGGTAGGAATTCTGCTGTTGAAACCAAGGGTTTCATAGCTTCTGTTGCCGAAATACTCGAGACAGGAAGCAATGAGGAAAAAGAACATGCACTTGAAGTCCTAATTTCTCTATGTTCTCAACGCATGGACTATTGTAGATTGGTTATGAGTCAGTATGTTATCTCTCATCTTTTCTATATATCCAAGAATGGAAGCGACAAAGGACAGGCAACTGCATTGGAACTGCTCCGTCTTCTGCAAGATGTGGAAGATGTGGAAGATGATGATTCCCTTGAACCAAATCTCAACAACACCTCCGGAGATTCAAACAGCCAACCTCAAGAGAGGAGATCATCAAAGGGATCAAAATTTCTGAAGAAACTACCCTTCTTAAAAACCAAGAGATGA 2256 0.398 MGTDSGEEAESLPNPRSFKVHSKLCVELMKILARVLRIFPAIEEARPRSSSGIESLCLLNNAIDKAKLLLQHCSDCSKLYLALTGNAILQRCQKARKSLLQSLIQIQGMVPVILAAEVSGIIDDLECATFVLDSAEEEAGKVVKELLEQDTDTMDGSAVKALQFAAPRLNITSQKAILIEKRSIKKLRDKIGTNDQKKKAILKFLWYILDKHGNHIIGEEMEKVYSNNDEPMATENSSRHSQQRHQPESDPCLHYDQYRNQTDEFGRATPLEEYKCPISSRLMYDPVVIASGVTYERMWIQKWFDEGNDTCPKTKKKLVHMGMTPNIAMKDLISKWCRNNGVSISDPNRLVGGFHSWEASMTSIKSFGSYINNFNLPLDLSNMSLGSLDTSYNSDVLHSKTTRESNLRSIMTNDDSHKRQAQEQIREANLQLLSKLHDLQWDSQCQVIEDVKENLKSNYQAFSSVSPQNFTEPLIRFLNSAYDLHDVKALRAGTQLLLEFVNNCRNGLSNFSEDVFTLLANFLDSEVTGEALAVMEELSSYLHGKAKIAASNALTSILNILNSDNKEFQRQAIVILYNLSFNGEVCPLMLSLKCIPTLLPFFKDRSLLRYCIVILKNLCDTEEGRNSAVETKGFIASVAEILETGSNEEKEHALEVLISLCSQRMDYCRLVMSQYVISHLFYISKNGSDKGQATALELLRLLQDVEDVEDDDSLEPNLNNTSGDSNSQPQERRSSKGSKFLKKLPFLKTKR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00815 751 CDD RING-Ubox_PUB 274 316 IPR045210 -
Aip05g00815 751 MobiDBLite consensus disorder prediction 709 751 - -
Aip05g00815 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 344 IPR013083 -
Aip05g00815 751 MobiDBLite consensus disorder prediction 229 252 - -
Aip05g00815 751 PANTHER U BOX DOMAIN-CONTAINING 2 736 - -
Aip05g00815 751 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Aip05g00815 751 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 736 - -
Aip05g00815 751 SUPERFAMILY RING/U-box 263 345 - -
Aip05g00815 751 Pfam U-box domain 272 340 IPR003613 GO:0004842|GO:0016567
Aip05g00815 751 SUPERFAMILY ARM repeat 431 703 IPR016024 -
Aip05g00815 751 Gene3D - 408 713 IPR011989 -
Aip05g00815 751 MobiDBLite consensus disorder prediction 715 734 - -
Aip05g00815 751 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00815 Aip-Chr5 10854165 10857434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00815 15 714 U-box Gene Family AT4G36550 38.028 2.35e-147 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00815 - - gmx:100791627 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00815 05 10854165 10857434 Aip05g00815 05 10854165 10857434 ECH