Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00813 ATGGGAAGAGGCAGAGGAGTTGCGGCTCTGAAACCCACGGCGGCAGTTACGGCGGCGGAGGTAAATGGATCAGGGCCGATGCCAGTATTAAAGGAAGTTAGATACCGTGGCGCGAGGAAGAGACCGTGGGGAAGATTCGCCGCTGAAATCAGAGACCCGTTGAAGAAAGCAAGGGTTTGGCTCGGAACCTTCGATTCTGCCGAGGATGCCGGACGCGCTTACGACGCCGCCGCAAGAACACTCCGGAGACCAAAAGCCAAGACCAATTTTCCTCGCCGCTCAGGATCCAGCCCTCGATGTAGAACTGCAGCTTCGCCAACGCCACTTGCTGCGATGGGAGATTCAACCCCTCTGCTGCTGCTCCGCCGCCCTGGATGGCAACTTCCTCCTCGGCCAGAGCCGTTTCCTCCATATGCAATTTTTATAAGTTGCTGA 435 0.5701 MGRGRGVAALKPTAAVTAAEVNGSGPMPVLKEVRYRGARKRPWGRFAAEIRDPLKKARVWLGTFDSAEDAGRAYDAAARTLRRPKAKTNFPRRSGSSPRCRTAASPTPLAAMGDSTPLLLLRRPGWQLPPRPEPFPPYAIFISC 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00813 144 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Aip05g00813 144 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Aip05g00813 144 CDD AP2 34 91 IPR001471 GO:0003700|GO:0006355
Aip05g00813 144 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Aip05g00813 144 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 101 - -
Aip05g00813 144 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
Aip05g00813 144 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Aip05g00813 144 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Aip05g00813 144 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 5 101 - -
Aip05g00813 144 MobiDBLite consensus disorder prediction 79 110 - -
Aip05g00813 144 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00813 Aip-Chr5 10831004 10831438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00813 1 91 AP2-EREBP Transcription Factor Family AT1G50640 69.231 4.25e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip05g00813 AP2 1.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00813 K09286 - pvy:116145234 126.331