Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00806 ATGGAAAGAAGAGGGGAAGAGGATAAGGAATTAGAGATGGCAACAATAACAGCAACAGCAACAACAACCACTTTGGGTAGTTATAGTGTTGTTGTTCCAAACAACAACAACAACAATAACAGGGATTCTTCTTCTTCAACTTCTTCAAAGTTGTCTTCTCCAACTGTGGTTGGAGCTTCTGAAACAACTCACCAACCATCTCAAACTCACTCATTAGTCTTCCACCACCATGATCCTCCAAACCACAACCACCACCATCAACATCATCTCTATCCTCATCTTCAGCCACCCAATCAACAATCTCTAAGACCAACCTCAGATCCAGATCTAACCTCGTCTCCTATTGCCACAACAGCACCACAGCCGCCGCCACCACCACCACAAGCAGCTGCAACAACCACCACAGCATTAGCAAGGTACAGAGAATGTCTGAGAAACCACGCAGCCAGCATGGGGAGCCATGTGGTGGATGGTTGTGGAGAGTTCATGCCAAGCGGAGAAGAAGGCACCCCGGAATCACTCCGGTGCGCCGCCTGTGAGTGCCACCGTAACTTCCACCGTAGAGAGGTTGAAGGCTCCGCTCCTCAACAGCATCACAACTATTACCCCAACAACAACAACAACAAGCACAACGGTCACAGCACTCATCATCTTCTTCAGTTCCACACAGCACCACCATCTTCATCCCTTCATCATCAACGATTCTCTCATGCTATTGCTGCTGCTGCTCCACCATCGGTTCAGCCGGTGATGATGGCGTTCGGAGGAGGAGGAGGAGGAGCGGCGGAATCCTCTAGCGAAGATCTGAACATGTTCCATCATCAGTCAAACGCATTAGGAGGGCAATTCTCAGTGCAGCAAGCATCAGCGTCAAAGAAGAGGTTCAGGACAAAGTTCACACAGCAGCAGAAAGATAGAATGATGGAGTTCGCTGAGAAGCTTGGGTGGAAGATTCAGAAACACGATGAGCAAGAAGTGCAGCAGTTTTGTTCTCAAGTTGGTGTTAAGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAGCAAGCTATCAAGAAACAACAGCAGCAGCACACGTAA 1080 0.4833 MERRGEEDKELEMATITATATTTTLGSYSVVVPNNNNNNNRDSSSSTSSKLSSPTVVGASETTHQPSQTHSLVFHHHDPPNHNHHHQHHLYPHLQPPNQQSLRPTSDPDLTSSPIATTAPQPPPPPPQAAATTTTALARYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPESLRCAACECHRNFHRREVEGSAPQQHHNYYPNNNNNKHNGHSTHHLLQFHTAPPSSSLHHQRFSHAIAAAAPPSVQPVMMAFGGGGGGAAESSSEDLNMFHHQSNALGGQFSVQQASASKKRFRTKFTQQQKDRMMEFAEKLGWKIQKHDEQEVQQFCSQVGVKRQVFKVWMHNNKQAIKKQQQQHT 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00806 359 Pfam ZF-HD protein dimerisation region 139 190 IPR006456 -
Aip05g00806 359 MobiDBLite consensus disorder prediction 192 212 - -
Aip05g00806 359 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 75 354 - -
Aip05g00806 359 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 75 354 - -
Aip05g00806 359 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 139 190 IPR006456 -
Aip05g00806 359 MobiDBLite consensus disorder prediction 197 212 - -
Aip05g00806 359 SUPERFAMILY Homeodomain-like 286 353 IPR009057 -
Aip05g00806 359 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 292 349 IPR006455 -
Aip05g00806 359 MobiDBLite consensus disorder prediction 23 133 - -
Aip05g00806 359 MobiDBLite consensus disorder prediction 93 116 - -
Aip05g00806 359 ProSiteProfiles 'Homeobox' domain profile. 290 354 IPR001356 GO:0003677
Aip05g00806 359 MobiDBLite consensus disorder prediction 23 74 - -
Aip05g00806 359 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 140 189 IPR006456 -
Aip05g00806 359 Gene3D - 281 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00806 Aip-Chr5 10745750 10747662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00806 112 354 ZF-HD Transcription Factor Family AT2G18350 50.204 4.32e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aip05g00806 ZF-HD_dimer 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00806 - - gmx:100776691 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00806 05 10745750 10747662 Aip05g00806 05 10745750 10747662 ECH