Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00800 ATGATGCATCATCGATGTTGCAGCGGAACTACTCATCAGGGGCACGTCATGGGTCCCTGCACATGTGCTATGTTCCATGGCCAAACAACCACCAATTCCTTCTCCATGCTATTCTCCATGCCCAACCACCACAACAACCCTTACGATCAACCTGATGATATCATTTACTCCTCCTCTTCTTCATCCTCCGTCGACTGCACCCTCTCCCTCGGAACCCCTTCCACCCGTTTCACCGAAGACGAAGAGAAGCGTACCCGCCATGAACGTCGTTCCTCCGTCTCCAACTTCTGCTGGGATTTGCTACAATCCACCAAACACAACCACTCTCAAACCAAGTCCTCCTCAAACCGCCCCTCCAACAACGCCGACCCTCTCCTCGCTCGTCGTTGCGCCAACTGTGACACCACTTCTACACCGCTCTGGAGGAATGGCCCCCGTGGCCCAAAGTCTCTATGCAATGCCTGTGGCATACGGTTCAAGAAAGAGGAGAGGAGGGCCAGTGCAGCAGCCGCCACCACCGCCGCGGCTTCTGGTGGCGTGATGGATTCATCGCAGATGTACAGCCACCACAACAGTAACTCGTGGTACGCACATTCGCAGAGCCAGAAGATGGCCGCGGCGGCGATGGGCAGCGAGTTCCGTTTCGTGGACGACGGTGATGTCCGGGACTCCGAAAACGGCATTCCGTTCCTGTCGTGGAGGCTCAACGTTACTGACAGAACAAGCCTCGTTCACGACTTCACAAGATGA 750 0.5573 MMHHRCCSGTTHQGHVMGPCTCAMFHGQTTTNSFSMLFSMPNHHNNPYDQPDDIIYSSSSSSSVDCTLSLGTPSTRFTEDEEKRTRHERRSSVSNFCWDLLQSTKHNHSQTKSSSNRPSNNADPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATTAAASGGVMDSSQMYSHHNSNSWYAHSQSQKMAAAAMGSEFRFVDDGDVRDSENGIPFLSWRLNVTDRTSLVHDFTR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00800 249 CDD ZnF_GATA 129 161 IPR000679 GO:0006355|GO:0043565
Aip05g00800 249 SMART GATA_3 124 179 IPR000679 GO:0006355|GO:0043565
Aip05g00800 249 ProSitePatterns GATA-type zinc finger domain. 130 155 IPR000679 GO:0006355|GO:0043565
Aip05g00800 249 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 127 166 - -
Aip05g00800 249 Pfam GATA zinc finger 130 164 IPR000679 GO:0006355|GO:0043565
Aip05g00800 249 Gene3D - 126 203 IPR013088 GO:0006355|GO:0008270
Aip05g00800 249 ProSiteProfiles GATA-type zinc finger domain profile. 124 160 IPR000679 GO:0006355|GO:0043565
Aip05g00800 249 PANTHER GATA TRANSCRIPTION FACTOR 18 2 248 IPR044272 GO:0003700|GO:0009908
Aip05g00800 249 PANTHER GATA TRANSCRIPTION FACTOR 18 2 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00800 Aip-Chr5 10605380 10606730 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00800 21 249 C2C2-Gata Transcription Factor Family AT3G50870 45.296 4.11e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aip05g00800 GATA 6.1e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00800 - - gmx:100790571 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00800 05 10605380 10606730 Aip05g00800 05 10605380 10606730 ECH
Aip05g00800 05 10605380 10606730 Aip01g00811 01 14237373 14238643 PCT