Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00776 ATGTGCCGGCTTTTTGTTGTGAAGTTTGATATCTTCAATTCCCTAGCTGATCCTTCTAATCCAGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTATTGGCGACGAACAGATTCGTGTGCGAAATCTGCAACAAGGGTTTCCAGAGGGATCAGAACCTTCAGCTCCATCGAAGGGGTCACAACCTTCCATGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAAGAAGAGGGTGTACGTGTGCCCTGAGCCAACGTGCGTTCACCACGATCCTTCACGCGCGCTCGGGGATCTCACCGGAATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCTAAGAAATACGCTGTTCAATCAGATTGGAAGGCTCACTCTAAGATTTGCGGCACTAGAGAGTACAAATGCGATTGTGGCACTTTGTTCTCAAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCCTTGGCCGAGGAAAGTGCGAGATCTCAAACTCATTCACAAACTACTCAGTCTCAGATTGGTGTTAAGGTTAGTTCTGAATCAGATTCTAAGGCTGTTAACGCTGAATCTTCGTCGCCTCAGGCGACACCTCCACCTCCTGCTCCTACTCCTGCTCCTGCTCCTCCACCGCCGCCGCCTCCTCCGGTTCAGCCGGAAGCTCCGCCACTGCCGGCCACTACTACTACTACTACCACCACCCAGCCAAACAGTGTTGTTGTGCCACTGGTTTTGCAGACTCAGAATCCAGAGTTGCCAGAAAATTCGCCACAAATCATAGAGGAGCCACAAGCTAACACTGCTCTGAATGGGAGCTGTAGCAGCAGCACTAGCTCAACAAGCAATGGTGGTACTAGCAGCAGTGTATTTGCAAGTTTGTTCGCTTCATCAACTGCGTCGGGAGGGCAGGACCGCCGCCAATATGCACCACCGCCACAGCCAACCATGTCTGCCACTGCTTTGCTGCAAAAAGCAGCTCAAATGGGTGCGGCTGCAACCAATGCCTCGCTGCTTCGTGGTTTAGGTATAGTGTCCTCTTCTGCTTCGTCTTCACCAGCTCAGCAAGATGGCTTGCAATGGGGTCAGCAGCCGGCCGAACCAGAGAGTGCCTCAGTTCCGGCGGGGCTTGGACTTGGGCTGTCTTTTGACAGTGGCTCTGGACTAAAGGAATTAATGATGGGGACTCCTTCCATGTTTGGTCCAAAGCATACCACCCTCGATTTTCTAGGATTGGGGATGGCTGCTGGAGGAACTCCTGGTGGAGGCTTGTCGGCACTCATCACATCTATTGGTGGTGGTTTGGATGTTAGTGCTGCGGCAGCAGCATCTTTTGGAAACGGAGAGTTTTCTGGCAAAGACATTGGGCGGAGCACATGA 1407 0.5217 MCRLFVVKFDIFNSLADPSNPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQTHSQTTQSQIGVKVSSESDSKAVNAESSSPQATPPPPAPTPAPAPPPPPPPPVQPEAPPLPATTTTTTTTQPNSVVVPLVLQTQNPELPENSPQIIEEPQANTALNGSCSSSTSSTSNGGTSSSVFASLFASSTASGGQDRRQYAPPPQPTMSATALLQKAAQMGAAATNASLLRGLGIVSSSASSSPAQQDGLQWGQQPAEPESASVPAGLGLGLSFDSGSGLKELMMGTPSMFGPKHTTLDFLGLGMAAGGTPGGGLSALITSIGGGLDVSAAAAASFGNGEFSGKDIGRST 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00776 468 MobiDBLite consensus disorder prediction 356 376 - -
Aip05g00776 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 61 IPR013087 -
Aip05g00776 468 SMART c2h2final6 80 110 IPR013087 -
Aip05g00776 468 SMART c2h2final6 39 61 IPR013087 -
Aip05g00776 468 SMART c2h2final6 115 135 IPR013087 -
Aip05g00776 468 Gene3D Classic Zinc Finger 93 176 - -
Aip05g00776 468 SUPERFAMILY beta-beta-alpha zinc fingers 38 135 IPR036236 -
Aip05g00776 468 MobiDBLite consensus disorder prediction 234 248 - -
Aip05g00776 468 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 304 - -
Aip05g00776 468 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 318 467 - -
Aip05g00776 468 MobiDBLite consensus disorder prediction 356 383 - -
Aip05g00776 468 MobiDBLite consensus disorder prediction 169 248 - -
Aip05g00776 468 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Aip05g00776 468 MobiDBLite consensus disorder prediction 170 203 - -
Aip05g00776 468 MobiDBLite consensus disorder prediction 204 233 - -
Aip05g00776 468 Gene3D Classic Zinc Finger 19 85 - -
Aip05g00776 468 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 19 304 - -
Aip05g00776 468 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 318 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00776 Aip-Chr5 10063401 10068529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00776 20 468 IDZ Gene Family AT5G66730 55.847 1.45e-154 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip05g00776 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00776 K25869 - gmx:100806404 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00776 05 10063401 10068529 Aip05g00776 05 10063401 10068529 ECH
Aip05g00776 05 10063401 10068529 Aip07g02580 07 107255702 107259429 ECH