Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00769 ATGAATCAAAGATCTATGGATGAACAAATGATGCTTATATCTCAGCTATATCCTGCTGGTGGTGGTGCCTACACTCAGATAATTGCTCAACAAGGGGAGAATAAGAAAGCAAGAAGGAGGCGTAATAAGAAGAAGAAGGGAGGAGAAAACGGAGGTGGAGAAGGGAACAAAAAGAGAAAGTTGAGTGAAGAGCAAGTGAATCTTCTTGAGATGAATTTTGGGAATGAACACAAACTGGAGTCGGAACGGAAGGACAAGCTAGCTTTGGAGCTTGGTTTGGATCCGAGGCAAGTTGCCGTTTGGTTTCAGAATAGAAGAGCTCGTTGGAAGAACAAGAAACTGGAGGAAGAATACTCCAATCTCAAGAGAGCACATGAAACCACTTTACTCGACAAATGTCGCCTTGAAACTGAGGTGCTGAAACTTAACGAGCAACTTTCTAATGCAAAAGAGGAGATTCAACGATTGCAAGACATGGTCCCAAGCAACAGTTCTAGTTCGCAATCGCAATCACAATCACAGTCAATGGAAATTATGGACCCGCCATTTCTTGGAGACTATGTCTTTTGTGTACCTGAAGCTCATTACATTAATGGCATGGAATGGGTTGATCCGTAcgaaaatatttggtaa 633 0.4155 MNQRSMDEQMMLISQLYPAGGGAYTQIIAQQGENKKARRRRNKKKKGGENGGGEGNKKRKLSEEQVNLLEMNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKRAHETTLLDKCRLETEVLKLNEQLSNAKEEIQRLQDMVPSNSSSSQSQSQSQSMEIMDPPFLGDYVFCVPEAHYINGMEWVDPYENIW 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00769 210 Pfam Homeodomain 57 111 IPR001356 GO:0003677
Aip05g00769 210 MobiDBLite consensus disorder prediction 157 176 - -
Aip05g00769 210 MobiDBLite consensus disorder prediction 30 62 - -
Aip05g00769 210 Gene3D - 48 120 - -
Aip05g00769 210 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Aip05g00769 210 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 207 - -
Aip05g00769 210 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 207 IPR045224 GO:0003700
Aip05g00769 210 SMART HOX_1 55 116 IPR001356 GO:0003677
Aip05g00769 210 Coils Coil 139 159 - -
Aip05g00769 210 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Aip05g00769 210 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Aip05g00769 210 SUPERFAMILY Homeodomain-like 56 120 IPR009057 -
Aip05g00769 210 MobiDBLite consensus disorder prediction 47 62 - -
Aip05g00769 210 Coils Coil 104 131 - -
Aip05g00769 210 CDD homeodomain 59 113 IPR001356 GO:0003677
Aip05g00769 210 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00769 Aip-Chr5 10007249 10009354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00769 1 206 Homeobox Transcription Factor Family AT4G36740 54.299 1.75e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Aip05g00769 Homeodomain 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00769 K09338 - gmx:100809616 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00769 05 10007249 10009354 Aip05g00769 05 10007249 10009354 ECH