Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00761 ATGTCTACTTCATTGCGAATTCATCTTCCGGCTAAGGATGTCGAGATGGTTGATGCTGACTCAGCAAAGAAAGTTTTTAAAATCCCTTCTACACCTAGTGCTGCAACAGGTGGATCAAAGACACTATTTGTTGAAAACCTGTCATTTAGTTTGCAACGATCTGACTTTGAGGAGTTTTTCAAAGAGTGTGGAGAAGTTGTTGATGTTCGTTTTTCTGTTGACAATACTGAGAGGTTTAAACGCTTTGGACATGTTGAGTTTGTTATTGCAGAGGTAGCACAAAGTGCTCTTGAATTGAATGAGCATGGGTTGTTGAATCATCCTGTTAGGCTTGATTTAGCTCGTGAAAGAGGTTCATATATCCCTGGTGGCAGAAATTCCTTCCAGAAAGGTGATCAGCTTCAAACTGGTCAAACTATATACATAAGGGGTTTTGATAAATCTCTTGGAGAAGAGATAAGAGCTAGCCTAAATGAGCATTTTGGTTCCTGCAGGGAGATCTCGAGGGTGTCAGTCCCAAAAGATTTCGAGTCTGAAGGTCCTAAATGCTTGAGAATGAGGACATGCTCTATCTACTTTCTAGTGATGATGATGAAGAGCAGTGCATTCAAATACCATGTTGATTTTTGGTTATCACTGCTAGTATTTAATAGGTTATGGTGGTTGATGTTGAGGCATACACCTATGATGATGAGGTCATCAAGAAAGCTGAAGCAATGGGGAAGCCCAAAAATCCTGAAGAAGAAGCTACTGTGGAAACTACTAGAGCCATAA 774 0.4031 MSTSLRIHLPAKDVEMVDADSAKKVFKIPSTPSAATGGSKTLFVENLSFSLQRSDFEEFFKECGEVVDVRFSVDNTERFKRFGHVEFVIAEVAQSALELNEHGLLNHPVRLDLARERGSYIPGGRNSFQKGDQLQTGQTIYIRGFDKSLGEEIRASLNEHFGSCREISRVSVPKDFESEGPKCLRMRTCSIYFLVMMMKSSAFKYHVDFWLSLLVFNRLWWLMLRHTPMMMRSSRKLKQWGSPKILKKKLLWKLLEP 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00761 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 109 IPR000504 GO:0003723
Aip05g00761 257 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 13 177 - -
Aip05g00761 257 PANTHER BNAA08G02930D PROTEIN 13 177 - -
Aip05g00761 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 116 IPR000504 GO:0003723
Aip05g00761 257 Gene3D - 17 138 IPR012677 -
Aip05g00761 257 SUPERFAMILY RNA-binding domain, RBD 39 181 IPR035979 GO:0003676
Aip05g00761 257 SMART rrm1_1 41 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00761 Aip-Chr5 9883615 9886877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00761 32 175 Eukaryotic Initiation Factors Gene Family AT1G71770 26.974 2.02e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00761 K11294 - ahf:112789008 283.493