Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00750 ATGGATATCAACCGCATGTTCGACATTGAGGGTCATGAGTCCGATGCGGGCAGTTCCGATGAATATTCGGGACATTACTGTGGTACCGACGATGAATACGATGACGTGGACGACATTGGTCCCGGAGGCAGTCCCGAAGCAAGGGAGCAAGGTGCTGCGGATGCTGCATATTGCAAGGAATCTGGTGGGATAAATGACGTGGCAAGCGGTACGACAAGCAGGCAAGTCGTCGCGAATGACTTCTTGGGTAGACAGTTTGCGACGGAGGAAGATGCTTATGCTGCATACAAGGAGTTTGCGAAATTGAGGGGCTTTGGAGTTCGGAAGGGAGATGTAGCTTGGGTTAATGGGGTTTTAGTCAGAAGAGACTTTTTTTGCCATCGACAAGGGACAAGACATTCTAAGCACTATGACCGTCCTGAGCGAGTAAGGGAGGAGAGGCTTGACAGCCAGACGGATTGTAAGGCTAAGTTGAAGATTTATTACGATGTGCAACACAACGTGTGGAAAGTGAGAACCATCATGGACGAACACAACCATGAGCTTGCCCCGGCGATGTTCACACATCTCCTCCCAAGTCACCGGAAGATGAGTGCGGGCGACAAGGCACAGGTGGATAGTTTCAAGCAGTTTGGGATCGCAACCTCGAAAATAATGGCTTACATGGCTGGGCAGTCTGCAACTATTAGTTACTTAGAGGGCAAGGCAAATGCGGACATGATAACGGTCGCACGTTACACACGTACCACGGAGAATCGTTTGGGTAGCTTATTTTGGGCGGATGGTGAGATGATTTCGGATTATCAGGTCTTTGGTGATGTCCTGGCATTCGACTCCACATATCGTTCTAACAAGTACAAGAAGCCATTGGTGGTTTTCTCTGGTTCAAATCACCACAAACAAACATCCATATTCGGGTTTGTGCTATTAGAGGATGAAGAGGTCCGAACTTATCGGTGGGTGTTGTTGAACCTGCTGGATGTTATGGGACAGAAGAGGCCATGCGTAGTTGTGACGGATGGGGACAAGGCAATGCGTGCTGCCATTGCGGAGGTGATGCCGGCCGCAACACATAGACTATGCGCTTGGCACCTAGAAAAGAATTGCGTCCAGAGGGTGAAGGATCTTGAATTTCGCAAGGTTTTTAAGAAAGCTCTGTATGCAAATTTTGAAGTCGACGACTTTGAGTTGTATTGGAAGTCTTCGGTTGAGTCGCTCGGCATAGTTGATAATACTTGGGTTCAAAACATGTACGAAACCAGAGAAAGCTGGGAATGGCCTACCTACGGGGCACATTCTGTGCGGGTTACAAGACAACTTCAAGATGACTACCGGAATAATGAAGTAACTGCCCAATTCTATTCCACGTACTATACTCCGGTGCTAACGACCGGCCTTGATTCGATCGAGCTTTTTGCATCAAAGGTGTATACACGAGCAATTTTTAGGGAAGTAAAGAAACAGATTAAGGGTGTCGCGAGTTTATTGTTTCGGAGCAGGGACAGCATTAGCACTACTAGTGTATACCAATTTTCGAAGATGGGAAAACCTAACAAGATACACAAGGTGTTGTATGATCCGAACGAGGAAAAGATTGAGTGTGAGTGTTCAATATGGAACAGTGAGGGAATTCCATGTAGTCATATATTCTGTGTCATGAAGTATGAGGGGTTGGAAGAAATCCCGGAGGGTCTTATTCTGAGCAGGTGGTGCAAGGATGCAAAGGGCTGGAGTTCGAAACCCCCCCAAGTGACAGATGGCCCTCAGGGACGCTTGCTCCGATATGGTGCCCTCAGTGGTTTGATGAATTTGGTTGCCAGACTTGGTTCTGAAGATCCCGCGGAGTTTGTTGTCGCTAGGGAAGGCATTGCCAGCCTTGTGGAGGACCTTCAACGAAGAGCATACCGCCGGGTCGGAAGCCAACTTGGTTTATCAATGCCGCCGGCACTGAAGGATCCACCGGTTTCAAAAACAAAGGGGGCTCCGAGGAAGGGAAAGGAGGTAGAGCCAGAACCGGGCAGCAAGTGTGAGATACCAACGAAGCGACGACGTTGTACAAGCTGTGGGGTTCATGGTCATACGAAGAAGACATGCACGTGGCATCGGGCCCATCGTGGACCTGACACTGAAGGGGGAGCGGTCCCAGGTTGCGCGGAGTGTTCCTCTGGGATGGGGAGTGCCCCGTCTGCAACTTTGAGAGATAAATCTGCTGGAAGATTCCAGAATTCGGAGCGCAATATTGATGAGACGGGTGACCTAGGCCACACCGCTTCACTCCATCGTGAGGGTGCAACACCGGGGTACAATCATGGGTCTAGTGAAACAGAGTGGAACCCCCTAATGGGTGTCGGGGGCGCTAGTGCCAACATCTTCCTCAGAGGGCAACACATTGGATAG 2397 0.4965 MDINRMFDIEGHESDAGSSDEYSGHYCGTDDEYDDVDDIGPGGSPEAREQGAADAAYCKESGGINDVASGTTSRQVVANDFLGRQFATEEDAYAAYKEFAKLRGFGVRKGDVAWVNGVLVRRDFFCHRQGTRHSKHYDRPERVREERLDSQTDCKAKLKIYYDVQHNVWKVRTIMDEHNHELAPAMFTHLLPSHRKMSAGDKAQVDSFKQFGIATSKIMAYMAGQSATISYLEGKANADMITVARYTRTTENRLGSLFWADGEMISDYQVFGDVLAFDSTYRSNKYKKPLVVFSGSNHHKQTSIFGFVLLEDEEVRTYRWVLLNLLDVMGQKRPCVVVTDGDKAMRAAIAEVMPAATHRLCAWHLEKNCVQRVKDLEFRKVFKKALYANFEVDDFELYWKSSVESLGIVDNTWVQNMYETRESWEWPTYGAHSVRVTRQLQDDYRNNEVTAQFYSTYYTPVLTTGLDSIELFASKVYTRAIFREVKKQIKGVASLLFRSRDSISTTSVYQFSKMGKPNKIHKVLYDPNEEKIECECSIWNSEGIPCSHIFCVMKYEGLEEIPEGLILSRWCKDAKGWSSKPPQVTDGPQGRLLRYGALSGLMNLVARLGSEDPAEFVVAREGIASLVEDLQRRAYRRVGSQLGLSMPPALKDPPVSKTKGAPRKGKEVEPEPGSKCEIPTKRRRCTSCGVHGHTKKTCTWHRAHRGPDTEGGAVPGCAECSSGMGSAPSATLRDKSAGRFQNSERNIDETGDLGHTASLHREGATPGYNHGSSETEWNPLMGVGGASANIFLRGQHIG 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00750 798 MobiDBLite consensus disorder prediction 1 30 - -
Aip05g00750 798 ProSiteProfiles Zinc finger SWIM-type profile. 521 557 IPR007527 GO:0008270
Aip05g00750 798 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 439 610 IPR031052 GO:0006355
Aip05g00750 798 SMART 26again6 532 559 IPR006564 GO:0008270
Aip05g00750 798 MobiDBLite consensus disorder prediction 643 678 - -
Aip05g00750 798 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 75 424 - -
Aip05g00750 798 Pfam FAR1 DNA-binding domain 96 183 IPR004330 -
Aip05g00750 798 MobiDBLite consensus disorder prediction 1 51 - -
Aip05g00750 798 MobiDBLite consensus disorder prediction 657 678 - -
Aip05g00750 798 MobiDBLite consensus disorder prediction 739 776 - -
Aip05g00750 798 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 75 424 IPR031052 GO:0006355
Aip05g00750 798 MobiDBLite consensus disorder prediction 739 756 - -
Aip05g00750 798 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 439 610 - -
Aip05g00750 798 Pfam MULE transposase domain 274 368 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00750 Aip-Chr5 9675675 9678518 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip05g00750 MULE 2.5e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00750 - - aip:107607194 969.148