Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00744 ATGGCTACTATCCTTTTGGCCATTGTGATTGCCACCCTTTTCACTGCAAACCCTATTTCTTGCGCCAAGCAATCCAAAATAACTGGCATGAAAATGAATGTGATTGATCAATGTTGGAGATTGAATCCCCAATGGAGGAGCCATCGATCGCAACTCGCCAACTGCTCCATTGGCTATGCGGGCAAGATGATGAACAACATTGGCAATGACCTCGTCTATTATGAAGTTACTGACCCTAGTGATGACCCCATAAACCCTAAGCCTGGTACCTTGCGATATGGAGCTTCTATGATTCAACAAAAAGTTTGGATTACATTTAAAAGCGACATGAAAATCACATTGGCCAAACCCCTTCTCATTAGTAGCTTTACCGCCATTGATGGTCGTGGCACCAATGTCCACGTTGCTAATAATGCATGCTTCATGATCTTTAAGGCAACGAATGTAATAATCCACAGCATTCGAATCCATCATTGTAAATCACAAGCTCCTGGGTTGGTGGTGGGTCCAAATGGAAAGGTAATTTCATTGGGTCAAGTTGATGGCGATGCAATCAGACTAGTCACTGCCTCAAAGATTTGGATTGATCATAATACACTTCATGATTGCGAAGATGGTCTTCTTGATGTTACACGAGGTTCCACTGATGTCACTATCTCTAACAACTGGTTCCGAAACCAAGATAAGGTTATGCTTCTTGGCCATGACGATGGATATATTAGAGACCGGAACATGAAAGTTACCGTTGTCTACAATCATTTTGGACCGAATTGCAACCAACGCATGCCAAGGATCCGTCATGGATATGCACATGTAGCGAACAATCTTTACCAGGGATGGATGCAATATGCTATTGGTGGAAGCAAAGAACCCAGTCTCAAAAGCCAATCTAACCTCTTCATAGCACCCAAATCCGGGAACAAGGAGGTGACATGGAGAAAAGGCAGTAACGAAAATGGGGACAGATGGGAATTCCATTCAGTAGGGGATGTTTTTGAAAATGGAGCGTCTTTCACGGCAACAGAAGGAGGACGTGTGCCAAAACCCAATTATAGTGAGGAACAACGTTTTAAGGTTCTTGATGCTAAGTCTGTTAGATTTTTGACAAAATCCTCTGGCGTACTACGATGCACCAACAAAAAATCTATTTGCTAA 1155 0.4277 MATILLAIVIATLFTANPISCAKQSKITGMKMNVIDQCWRLNPQWRSHRSQLANCSIGYAGKMMNNIGNDLVYYEVTDPSDDPINPKPGTLRYGASMIQQKVWITFKSDMKITLAKPLLISSFTAIDGRGTNVHVANNACFMIFKATNVIIHSIRIHHCKSQAPGLVVGPNGKVISLGQVDGDAIRLVTASKIWIDHNTLHDCEDGLLDVTRGSTDVTISNNWFRNQDKVMLLGHDDGYIRDRNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWMQYAIGGSKEPSLKSQSNLFIAPKSGNKEVTWRKGSNENGDRWEFHSVGDVFENGASFTATEGGRVPKPNYSEEQRFKVLDAKSVRFLTKSSGVLRCTNKKSIC 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00744 384 Gene3D - 32 376 IPR012334 -
Aip05g00744 384 PANTHER PECTATE LYASE 18-RELATED 10 380 IPR045032 GO:0030570
Aip05g00744 384 PRINTS Pollen allergen Amb family signature 55 72 IPR018082 -
Aip05g00744 384 PRINTS Pollen allergen Amb family signature 117 133 IPR018082 -
Aip05g00744 384 PRINTS Pollen allergen Amb family signature 181 202 IPR018082 -
Aip05g00744 384 PRINTS Pollen allergen Amb family signature 261 280 IPR018082 -
Aip05g00744 384 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Aip05g00744 384 PRINTS Pollen allergen Amb family signature 323 347 IPR018082 -
Aip05g00744 384 PRINTS Pollen allergen Amb family signature 354 377 IPR018082 -
Aip05g00744 384 SUPERFAMILY Pectin lyase-like 54 374 IPR011050 -
Aip05g00744 384 PANTHER PECTATE LYASE 10 380 - -
Aip05g00744 384 SMART amb_all 109 306 IPR002022 -
Aip05g00744 384 Pfam Pectate lyase 120 300 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00744 Aip-Chr5 9582748 9584153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00744 63 315 Polysaccharide Lyase AT5G09280 70.751 3.14e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00744 K01728 - gmx:100780437 631.328