Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip05g00728 | ATGGGTTGGTTATCCAAGTTGCTTAAGGGCTCTAACCATAGAACTTCAAGAGGGCAATACCATGGCAAATATGGAGAGGACAGAATTTGGGATAACCATCATGCTTCAGTGGATGATTTGAACGATGTTGAGAAAGAGGACATTGATTGTGCAATTGCACTCTCTCTGTCAGAGCAGGATCAGAAAGGAAAAAGTGTTGTTGAGGACGACTCTCAATCCGAAGAAGATGAACAACTTTGTAAAGTTGATGATGAGGAAGATGAGCATACTTGTACAGTTCAACAACAAGAAGAAGAACATCTTGATAAGGTTCGGCTGGATGAAGATGATGAACATCTTTCTAAAGATCAACTTGAGGAAGATGAGCAACTTGCCAGGGCAATCCAAGAAAGTTTGAAAATTGATTCTCCTCCTAGTCCTAGATATGAGAATGATTCTATTTTCCAACCTTTATCAAACCTCTTTCCACCAGGATACAGAATCTGTGCTGGATGCAAAGCTGAAATTGGGCATGGAAGATTTTTAAGTTGCATGGGAGCTGTTTGGCATCCACAATGTTTTCGCTGCAATGCTTGCAATCTTCCAATAACAGATTATGAGTTTTCCATGTCTAGCAATTGCCCCTACCATAAATCTTGCTACAGGGAGCAACACCACCCAAGATGTGATGTTTGCAATAACTTTATTCCAACTAATTCAGCTGGTCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGTCCATCGCATGATCGAGATGGAACTCCTCGGTGTTGTAGCTGCGAAAGAATGGAGCCAAGGGATACAAAGTATCTTTTGCTTGATGATGGTAGAAAGCTATGTTTAGAGTGTCTGGACTCATCAATCATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAGTTCTATGAAGGTTTAAACATGAAAGTTGAGCAGCAAGTTCCTATGCTTCTGGTTGAGAGACAAGCACTGAATGAGGCCATGGAGGGAGAAAAGAATGCAAGTGGTCATCACCACTTGCCTGAAACTAGAGGACTGTGTTTGTCAGAAGAGCAAACTGTCACCTCGATTTCAAGGAGACCAAAGATAGGAGCAGGCCATCGAGTCGTGGATATGGTAACAGAGCCTTTTAGGCTGATCCGTCGATGTGAAGTGACAGCCATTCTTGTGTTGTATGGCCTTCCTAGGTTGTTGACAGGATCAATCCTGGCTCATGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTATCCCAATCTGAGTCCAGAGGTTGAAGAAGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAAATATATTCTGCATCCGGTAGTGATTGTTCATCTTCGTCTTCATCATCGCCTTCCTCCTCCTCCTCTTCCTCCTCCTCCGCATCATCAAAGAAAGGCAAACGGTCTGATTTCGAGAAGAAGCTCGGCGAGTTTTTTAAGCACCAGATTGAGGCTGATACATCATCAGCTTATGGAAAAGGATTCAGGTTGGGAAACGAGGCAGTGCTCAAGTATGGTCTCAGAACCTCCCACTTTTTGAACCAGCATAGGATCAAAGTGAGAAGTAATGCTAGTAATGCAGCAAGAAAGACAAGCAGAGACCATGGGGTATTGAAGCCACAGCATCAGTTCTGA | 1671 | 0.4297 | MGWLSKLLKGSNHRTSRGQYHGKYGEDRIWDNHHASVDDLNDVEKEDIDCAIALSLSEQDQKGKSVVEDDSQSEEDEQLCKVDDEEDEHTCTVQQQEEEHLDKVRLDEDDEHLSKDQLEEDEQLARAIQESLKIDSPPSPRYENDSIFQPLSNLFPPGYRICAGCKAEIGHGRFLSCMGAVWHPQCFRCNACNLPITDYEFSMSSNCPYHKSCYREQHHPRCDVCNNFIPTNSAGLIEYRAHPFWLQKYCPSHDRDGTPRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKVEQQVPMLLVERQALNEAMEGEKNASGHHHLPETRGLCLSEEQTVTSISRRPKIGAGHRVVDMVTEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIYSASGSDCSSSSSSSPSSSSSSSSSASSKKGKRSDFEKKLGEFFKHQIEADTSSAYGKGFRLGNEAVLKYGLRTSHFLNQHRIKVRSNASNAARKTSRDHGVLKPQHQF | 556 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip05g00728 | 556 | MobiDBLite | consensus disorder prediction | 454 | 480 | - | - | |
| Aip05g00728 | 556 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 188 | 243 | - | - | |
| Aip05g00728 | 556 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 155 | 187 | - | - | |
| Aip05g00728 | 556 | ProSiteProfiles | LIM domain profile. | 160 | 220 | IPR001781 | - | |
| Aip05g00728 | 556 | MobiDBLite | consensus disorder prediction | 59 | 107 | - | - | |
| Aip05g00728 | 556 | CDD | LIM_DA1 | 162 | 214 | - | - | |
| Aip05g00728 | 556 | ProSiteProfiles | Ubiquitin-interacting motif (UIM) domain profile. | 119 | 138 | IPR003903 | - | |
| Aip05g00728 | 556 | Pfam | Protein DA1 | 311 | 521 | IPR022087 | - | |
| Aip05g00728 | 556 | MobiDBLite | consensus disorder prediction | 534 | 556 | - | - | |
| Aip05g00728 | 556 | SMART | uim | 119 | 138 | IPR003903 | - | |
| Aip05g00728 | 556 | SMART | uim | 43 | 62 | IPR003903 | - | |
| Aip05g00728 | 556 | MobiDBLite | consensus disorder prediction | 454 | 476 | - | - | |
| Aip05g00728 | 556 | SMART | lim_4 | 161 | 213 | IPR001781 | - | |
| Aip05g00728 | 556 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Aip05g00728 | 556 | PANTHER | TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED | 1 | 522 | - | - | |
| Aip05g00728 | 556 | MobiDBLite | consensus disorder prediction | 84 | 107 | - | - | |
| Aip05g00728 | 556 | ProSitePatterns | LIM zinc-binding domain signature. | 162 | 196 | IPR001781 | - | |
| Aip05g00728 | 556 | Pfam | LIM domain | 162 | 217 | IPR001781 | - | |
| Aip05g00728 | 556 | Gene3D | Cysteine Rich Protein | 156 | 219 | - | - | |
| Aip05g00728 | 556 | PANTHER | PROTEIN DA1-RELATED 2 | 1 | 522 | IPR045218 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip05g00728 | Aip-Chr5 | 9314912 | 9321375 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | Others | Aip05g00728 | DA1-like | 8.1e-100 | CL0126 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip05g00728 | - | - | aip:107642826 | 927.161 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aip05g00728 | 05 | 9314912 | 9321375 | Aip05g00728 | 05 | 9314912 | 9321375 | ECH |