Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00724 ATGGAAGTACTTCCCTGTTCTGGTGTTCAATGTACAGGGGAATCTGACCGTCCTCAGCAGAATCCAGGGACAGCCTTTTTATATCAGGGAGAACCTAATTACCCTGAAAATGGTCAACAAGTTAAATTTGGAGACAGTCAACTGAATGAATTGTCACACAAAATGGAAGGGTCTCAGATAGAAAAGCAAGGTGAAGAAAAATGGACTGTCTGTCATTTGTCGACTAATTCGGATGTTCAATGCAGCAGAGATTCAGGTTGTGGCTTTCAGGGGGAAGACCAGAAGGAAGACTCCGCTCTCGATGATCTTGATGATGATTTGATAAATGAACCTTGCTTAACCTCTGAAAATTCTCTCTTGGTTGTGGATACGATTGAAAGCGAATCACCAAACAACAGGGAAGGAGATTTATCATTTTCTGAACCCAAGTGGCTAGAGGGGGATGAACCTGTGGCATTATGGGTCAAGTGGAGAGGAAAGTGGCAGACTGGCATCAGATGTGCGAGAGCTGACCGGCCATTATCAACTTTGAGAGCAAAACCAACTCATGGACGGAAGAAATATTTTGTCATATTTTTTCCACACACAAGGAATTATTCTTGGGCAGATATGCTGCTTGTCCGATCAATCGATGAGTTTCCCCATCCTATTGCATATAAGACTCATTGGGTAGGATTAAAAATGGTAAGCGACTTGACTATTGCACGGCGGTTTATAATGCAGAAGCTAGCTATTGGAATGCTGAATATTGTTGATCAGCTTCATCCAAATGCACTGACAGAAACTGCCCGTGATGTGAAGGGCTGGAAGGAATTTGCCATGGGTGCTTCCCATTGTACTGGTTATTCAGAATTTGGAAGAATGCTTCTAAAGCTGCACAATAGCATATTGCAGCCCTACATAAATGCTGATTGGTTACATCATTCTTCTCACTCTTGGGCTGAAAGATGTCATATTGTGAATAGTGCCGAATCTGTAGAGCTGCTGAAGGAGGAATTGTCTGATTCTATTTTATGGAACGATGTCAACTCTCTTTGGAGGACACCGGCACAACCAATGTTAGGTTCTGACTGGAAATCCTGGAAGCATGATGTAATGAAATGGTTTACAACTTCACCTTCCTTATCTTGCAGCAAAGACACACAGCCACAGACTCCTGATGCTTCGTATGCTGCAAACCTTCAGGTTTCTAGAAAACGGGCCAAACTTGAAGTTCGTCGGGCAGATACACATGCTTCGCAAGCGGAAAGGAAAGATGTGAATCAGTCTGTTGCTCTTGAGACTGACCTTGGGTTCTTTAAGAATCAAGATACATTGAGCCTATTAGCAGCTGAGAATGGTAAACATGAAGATGTTAGGGAGGTATCTGCTGCGAACGATTTAACTAGTAATGTGACCAATAAATGGAATGAAATTGTAGTTGAGGCTGCCAATTCGGATTGCTTGCATACCAAAGGAATGGAATTAACACCTGTGAGTGAAATGGCTGTTTCAAAATCAGTAGAGCCCGGTAGTAAGAATCGACAATGTATAGCCTATATTGAATCAAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTTTATTGTTGTGTACATTTGTCCTCTCGATTTTTGGGCAGCTCAGAAAAAGCTGAGAAGCTGGTTCCAGTTGATACTCCTATGTGTGAAGGTACTACTGTTCTGGGTACAAAATGCAAGCACCGGGCCCTACCTGGTTTTCTATTCTGTAAGAAACACAGGCCTCATGATGAAACAGAGAAGATCTCACATTCGCCACAAAGTACACTGAAAAGGAAACTTGAAGAAAATTATGCTGGTTCAGTGAACACCTGCAGAGACATTGTGTTGGTAAATTCTGAGAGCCCACTGGAAGTGGAGCCAGTGTCATTCATTGGCGGTGATTACTTTCAAAGAAAAAGCAGCTTAGGTGAGAATCCCACACATCCTGATAATAATTATGATGCAATGAAGGGTCTGCACTGTATTGGTTCTCCTCCCTTTGATGACAAGAATCCATGTAGAGAAGCTCCTAAGCGATATTGCTTGTATTGTGAAAATCACCTTCCTAGCTGGCTTAAACGTGCAAGAAATGGGAAGAGTAGAATTGTATCGAAAGAAGTGTTCACAGAACTTTTGAGGGACTGCAGCTCGTGGGAGCAAAAGGTGCATTTGCATAAAGCATGTGAGCTTTTCTACAGGCTGTTCAAAAGCATTTTATCACTAAGAAACCCAGTTCCTAAGGATGTTCAATTCCAGTGGGCTTTGACTGAAGCCTCTAAAGATACTAGTGTAGGAGAATTCTTTACAAAGTTGGTTCATAGTGAGAAGGCTAGAATCAAACTAATTTGGGGATTTGGTGATGACTTGGATGTATCTCCTATCATGGAAGAACCACCACTTTTGCCATCCACAACCACTGATAGCATCGATAATGAAAATGCCATTAAGTGTAAGATATGCTCTGCAGAATTCAGTGATGACCAAGCTCTTGGTAACCATTGGATGGATAGTCATAAAAAGGAAGCACAGTGGCTGTTTAGGGGTTATGCATGTGCCATTTGTCTGGATTCTTTTACGAACAAGAAACTGTTGGAAACACATGTTCAAGAGCGACACCATGTGCAGTTTGTTGAACAGTGTATGCTTCTACAATGTATTCCTTGTGGTAGTCATTTCGGAAACAGTGAGCAATTATGGCAGCATGTTTTATCAGTTCACCCTGTTGATTTAAAGCCATCAAAAGCTCCTGAGCGGCAAACTCTCCCTGCTGGAGCTGGTCAAGATTCTCCAGTAAAACATGTCCAGGAAAACTCTGCTCCTTTGGAGAATAATTCTGAGAATCCGGGTGTCTTGAGGAAGTTCACTTGCAGGTTTTGTGGGTTGAAATTTGATTTGTTACCTGACCTTGGTCGACATCACCAAGCTGCCCATATGGGACCCAATCTAGTTAGCAACCACCCTGCCAAGAAGGGGGTTCGCTACTATGCATATAGATTAAAATCTGGCAGACTTAGCCGTCCTAAATTTAAAAAAGGTTTGGCAGCAGCATCATATAGGATCAGAAATAGGGCTAATGCTAATCTAAAGAGAGGCATCCAAGCAACAAAATCACTTGGCATGAGGGACATGTCCTTACAACCTCGTGTAACGTCATTACAACCTCAGGTGACAACATCCTTACAGCCTCATGTAACTGAAACATCAAAGATTAGTAAATTCGCGGAACATCAGTGCTCGGGAGTTGCAAAAATTTTATTTTCTGAGATTCAGAAGACTAAACCCCGGCCCAACAATCTTGATATTCTATCAATTGCTCGCACTGCTTGCTGCAAAGTTAGTCTTGCAGCCTCACTTGAGGAGAAATTTGGAATTCTACCTAAAAGAATATATTTGAAGGCAGCAAAACTTTGTGCTGAGCATAATATTATTGTAAATTGGCACCATGAGGGGTTTATTTGTCCTAGAGGCTGCAATGGTTTGAAGGATCAAGCATTGCTCTCTCCCTTATCATCTCTTCCTAATAGTTTTGTGAGGCCAAAATCTGTAAGTGTATCAGATCATGCAAGTGATGAGTGGGAACTGGACGAATTTCATTGCATCATCAATTCACATGGTCTAAAGTTAGGATCACTGCAAAAATCTTCAATCTTTTGTGATGATATAAGCTTCGGGAAGGAATCAACTCCTGTGATTTGTGTAGTAGATCAAGAACTTTTGCATTCTATCAATAAGAATGGTTCCAATGATCAAGATACTGACTCTGCTATGCCTTGGAAGAGCTTTACCTATGTTACAAAGGCAATGCTTGATCAATCCCTTAGTCTTGATTCAGAGAGTCTGCAATTGGGATGTTCCTGCTCATATTCTTCCTGCTGTCCTGAAACATGTGACCATGTATACCTTTTTGGTAATGACTATGAGGATGCGAACGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGACGAGAATGGTCGAATAATATTAGAGGAAGGTTACCTTGTCTATGAGTGTAACCGAAGATGCAGATGCAATAAGTCCTGTCCAAACAGAATATTACAGAATGGAGTACGAGTCAAGTTGGAAGTCTTTAAAACAGAGAATAAGGGATGGGGGGTAAGGGCTGGGGAGGCTATCCTACGTGGCACATTTGTGTGCGAGTACATTGGAGAGGTTTTAGATGTTCAGGAGGCACATAACAGGCGCAAGAGATATGGCACAGAACATTGCAGTTATTTCTATGACATCGATGATCATGTTAACGATATGAGCAGATTGATAGAAGGACAGGCGCACTATATAATAGATGCTACTAAATATGGAAATGTGTCCAGGTTCATCAATCATAGCTGCTCGCCAAATCTTGTGAATCACCAAGTTCTAGTCGAGAGCATGGATTGCGAGCGTGCGCACATCGGTCTTTATGCAAGTCGGGATATTGCTCTGGGTGAAGAGCTGACACATGATTATCATTATAAGCTTGTGTCTGGAGAAGGAACTCCTTGCCTTTGCGGCGCTTCCAAGTGCAGGGGACGCCTTTATTAG 4560 0.4215 MEVLPCSGVQCTGESDRPQQNPGTAFLYQGEPNYPENGQQVKFGDSQLNELSHKMEGSQIEKQGEEKWTVCHLSTNSDVQCSRDSGCGFQGEDQKEDSALDDLDDDLINEPCLTSENSLLVVDTIESESPNNREGDLSFSEPKWLEGDEPVALWVKWRGKWQTGIRCARADRPLSTLRAKPTHGRKKYFVIFFPHTRNYSWADMLLVRSIDEFPHPIAYKTHWVGLKMVSDLTIARRFIMQKLAIGMLNIVDQLHPNALTETARDVKGWKEFAMGASHCTGYSEFGRMLLKLHNSILQPYINADWLHHSSHSWAERCHIVNSAESVELLKEELSDSILWNDVNSLWRTPAQPMLGSDWKSWKHDVMKWFTTSPSLSCSKDTQPQTPDASYAANLQVSRKRAKLEVRRADTHASQAERKDVNQSVALETDLGFFKNQDTLSLLAAENGKHEDVREVSAANDLTSNVTNKWNEIVVEAANSDCLHTKGMELTPVSEMAVSKSVEPGSKNRQCIAYIESKGRQCVRWANDGDVYCCVHLSSRFLGSSEKAEKLVPVDTPMCEGTTVLGTKCKHRALPGFLFCKKHRPHDETEKISHSPQSTLKRKLEENYAGSVNTCRDIVLVNSESPLEVEPVSFIGGDYFQRKSSLGENPTHPDNNYDAMKGLHCIGSPPFDDKNPCREAPKRYCLYCENHLPSWLKRARNGKSRIVSKEVFTELLRDCSSWEQKVHLHKACELFYRLFKSILSLRNPVPKDVQFQWALTEASKDTSVGEFFTKLVHSEKARIKLIWGFGDDLDVSPIMEEPPLLPSTTTDSIDNENAIKCKICSAEFSDDQALGNHWMDSHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNSEQLWQHVLSVHPVDLKPSKAPERQTLPAGAGQDSPVKHVQENSAPLENNSENPGVLRKFTCRFCGLKFDLLPDLGRHHQAAHMGPNLVSNHPAKKGVRYYAYRLKSGRLSRPKFKKGLAAASYRIRNRANANLKRGIQATKSLGMRDMSLQPRVTSLQPQVTTSLQPHVTETSKISKFAEHQCSGVAKILFSEIQKTKPRPNNLDILSIARTACCKVSLAASLEEKFGILPKRIYLKAAKLCAEHNIIVNWHHEGFICPRGCNGLKDQALLSPLSSLPNSFVRPKSVSVSDHASDEWELDEFHCIINSHGLKLGSLQKSSIFCDDISFGKESTPVICVVDQELLHSINKNGSNDQDTDSAMPWKSFTYVTKAMLDQSLSLDSESLQLGCSCSYSSCCPETCDHVYLFGNDYEDANDIFGKPMRGRFPYDENGRIILEEGYLVYECNRRCRCNKSCPNRILQNGVRVKLEVFKTENKGWGVRAGEAILRGTFVCEYIGEVLDVQEAHNRRKRYGTEHCSYFYDIDDHVNDMSRLIEGQAHYIIDATKYGNVSRFINHSCSPNLVNHQVLVESMDCERAHIGLYASRDIALGEELTHDYHYKLVSGEGTPCLCGASKCRGRLY 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00724 1519 ProSitePatterns Zinc finger C2H2 type domain signature. 959 980 IPR013087 -
Aip05g00724 1519 SMART preset_2 1221 1348 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip05g00724 1519 Pfam SET domain 1375 1495 IPR001214 GO:0005515
Aip05g00724 1519 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1519 - -
Aip05g00724 1519 Pfam Pre-SET motif 1225 1356 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip05g00724 1519 ProSiteProfiles Post-SET domain profile. 1503 1519 IPR003616 -
Aip05g00724 1519 SMART PostSET_3 1503 1519 IPR003616 -
Aip05g00724 1519 ProSiteProfiles Zinc finger C2H2 type domain profile. 852 875 IPR013087 -
Aip05g00724 1519 ProSitePatterns Zinc finger C2H2 type domain signature. 888 909 IPR013087 -
Aip05g00724 1519 ProSitePatterns Zinc finger C2H2 type domain signature. 820 841 IPR013087 -
Aip05g00724 1519 MobiDBLite consensus disorder prediction 1 32 - -
Aip05g00724 1519 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1519 - -
Aip05g00724 1519 ProSiteProfiles Pre-SET domain profile. 1285 1361 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip05g00724 1519 SUPERFAMILY SET domain 1215 1509 IPR046341 -
Aip05g00724 1519 MobiDBLite consensus disorder prediction 12 32 - -
Aip05g00724 1519 ProSiteProfiles SET domain profile. 1364 1496 IPR001214 GO:0005515
Aip05g00724 1519 SMART c2h2final6 886 909 IPR013087 -
Aip05g00724 1519 SMART c2h2final6 852 875 IPR013087 -
Aip05g00724 1519 SMART c2h2final6 818 841 IPR013087 -
Aip05g00724 1519 SMART c2h2final6 957 980 IPR013087 -
Aip05g00724 1519 Gene3D Classic Zinc Finger 805 878 - -
Aip05g00724 1519 Coils Coil 398 418 - -
Aip05g00724 1519 ProSiteProfiles Zinc finger C2H2 type domain profile. 957 985 IPR013087 -
Aip05g00724 1519 Gene3D SET domain 1213 1519 IPR046341 -
Aip05g00724 1519 ProSiteProfiles Zinc finger C2H2 type domain profile. 818 846 IPR013087 -
Aip05g00724 1519 SMART set_7 1364 1502 IPR001214 GO:0005515
Aip05g00724 1519 Pfam Zinc finger C2H2-type, 3 repeats 854 981 IPR040689 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00724 Aip-Chr5 9203094 9213761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00724 124 1518 C2H2 Transcription Factor Family AT2G23740 51.099 0.0 1380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip05g00724 Pre-SET 3.5e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00724 05 9203094 9213761 Aip05g00724 05 9203094 9213761 ECH