Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00712 ATGTCCATAAAGGAGGATGATGTAAAGAATGATTCTGATAATGATTTGGGTGATGATTTCGATTATCAACCGAATGCAGAAGATGATGCTGATGACGACGATGTGGATTCGCTGGATTCCACTAGCAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCGGATTTAATGGTGGAGGATATTTGGAACCTGGAGTTTAGGACGGAGGATGAGGCTTGCCAATTTTATAACGCTTATTCTTGTTGGCATGGATTTGTAATGAGGAAGGACGACGTGGTTAAGGATAATCAAGGTAGAATCATTAGCAGGCAACTTGTTTGCAACAAAGAGGGCTGGAGAAATATGAGGTATCTTGATATGGATGATAGATCAAGGGAGTCAAGGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTAGGGTAAAGCTTGACTACAGCTGCGGTAGATGGAAGGTATCATGTTTTGTGGAATCTCACAACCACGATCTGACGCCACCCCAATTTGCGCATCTGGTACCGGCCAATCGTCGTCTAACTGTCACTGATAGAGTCCAAGTGGAAAATCTTCATAATTTTGGTGTCAAGAGCTGCCATATTATGGGGTATATTGCATTCCAGAAGGGTGGATATCGTCATGCTGGCTTCACACGGAAAGATTTGTACAACCACATCGATCGCTATCATCGGGCAAAAGTTAAAAACGGGGATGCCAATGCGGCAATAAACTATTTGATTGGCAAGTCAAACAACGATCCGATGTTCTTTGGAAAGTATACGTTCACTAGTGACGAAAGGCTGGAGCATATTTTTTTGGCAGATGGGCAGTCAATTATCAAATATCTCTGCTTTGGAGATATTGTTGCCTTTGATTCAACCTACAAGAAGAATAAATACAACAAGCCTTTGGTCATTTTCTCTGGATGCAATCATCACGGGCAGACTGTTATCTTCGGCCCCGGCCTACTATCCGACGAAACCACAGAGACGTATAAGTGGTTGTTGGAAACCTTTGTTGAAGCGATGGGTGGGAAAAGTCCAAAAGCAGTAATAACTGACGGAGACCTTGCCATGCGAGATGCAATCAAGAATGGTCTTATATACGACAACAACGACCAGAGAGACTTTGATCGGAGATGGGCGGCCATTTTGGATAAGCACAAGCTTGTTGGCAGTACCTGGATGGAAAAGACGTACGAAACTCGTGAGATGTGGTCCCATTGTTTCCTCCGAGATAAGTTTTTCGGTTACATAAGGACAACATCACAGTGTGAAGGTACAAATTCTCTCATCAGATTTTATGTTAATCGCAAGAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAAAAACAACGAATTAATAGCTGACTTTAAGTCTCAGTGCTCAGAGCCAGTGATGATTACCTCGTTGGAGGTATATGAAAGATATGCATCATGTTATTTCACGCAAAACATTTTCAAGAAAATTCGTAATGAGATTCAGAGGGCAGGGGCTTTGAATATAACGGTACTAAGCACAACCTTGGACAAGGTAGAGTTCAGTGTGACTGCTCTCGGAGACCCGGCCAAAGATCGACGGATGGAAGTTGATAGAGGTAAGAATCTGTTCTCGTGCTCGTGCAAGCTGTTTGAATCACGTGGTATTCTCTGTAGTCATATCTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTCGTTGATATACAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAGAAATGCCTGTGAATGATGACATCGAAAGGGTCTTAAAGTTTCGAGTTGGAGCATTGGCATCGAATTGCAACAAGCTGTGTGATATTGCTTGCAAGGATCTTGCAGACTTTGATGAAGTCCAGTCTGAACTTGTCAATTTAGTTATCCGCCTGCAGTCCCGCAAACAAGGCAAGTCAACTCCTAATGTTAACGTGGAAGGCATCAACGATCCCTTTGTTGTCAAAAGTAAAGGAGCCCCTTCCAAGAGGTCTTCTTGGAGGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCACTGTCCAGATCTGATGCAGCATAGTGTGGATGGTAACCCTCGCGATCAATCATATGGCAATGCATCGGCCAAGGACTCAGGTTTTAGTCCAGAAAGGTTTGCTAATTCTTCGAGGTCGTTCTCAATTAAGTCCGAACACCACTCAGGACCTAATACCAAGGGTGGAACAAGGAAGTTTACGGCGACGGGTATGAGGAACCGGAAGGGTAAAGACAACACTTTTGTTGAGCGGAGCCTCCATGAAAGCAGCGAATCCATTGACATCGCGTCCACGAATGGTATTTTCAATAAAAATCTCTACTCGTTAACACAGCAGGTGAAGGAGTCACAGCAGGACAAGAGACATTCATTCACGAACTATGAATGCGTTAATGATGTCATTGATGATAAATGTGACACGCGACATGTGCAGATCGATGTCCGAGATCCGTTACCATCGTCACTGCCTTGTGGCAACAAACAAGGATCGTACATGGCATTGTTCGCGTCGATGCATAGGACACTTTGA 2592 0.4356 MSIKEDDVKNDSDNDLGDDFDYQPNAEDDADDDDVDSLDSTSKSEEVCGVKRIADLMVEDIWNLEFRTEDEACQFYNAYSCWHGFVMRKDDVVKDNQGRIISRQLVCNKEGWRNMRYLDMDDRSRESRSLTRTKCPARLRVKLDYSCGRWKVSCFVESHNHDLTPPQFAHLVPANRRLTVTDRVQVENLHNFGVKSCHIMGYIAFQKGGYRHAGFTRKDLYNHIDRYHRAKVKNGDANAAINYLIGKSNNDPMFFGKYTFTSDERLEHIFLADGQSIIKYLCFGDIVAFDSTYKKNKYNKPLVIFSGCNHHGQTVIFGPGLLSDETTETYKWLLETFVEAMGGKSPKAVITDGDLAMRDAIKNGLIYDNNDQRDFDRRWAAILDKHKLVGSTWMEKTYETREMWSHCFLRDKFFGYIRTTSQCEGTNSLIRFYVNRKNTLIDFMHNLDRALKEYKNNELIADFKSQCSEPVMITSLEVYERYASCYFTQNIFKKIRNEIQRAGALNITVLSTTLDKVEFSVTALGDPAKDRRMEVDRGKNLFSCSCKLFESRGILCSHIFCAMKFENILEFPDSLIYKRWTKNAKNEFISTEMPVNDDIERVLKFRVGALASNCNKLCDIACKDLADFDEVQSELVNLVIRLQSRKQGKSTPNVNVEGINDPFVVKSKGAPSKRSSWRKKRACSNCHKYGHYYKHCPDLMQHSVDGNPRDQSYGNASAKDSGFSPERFANSSRSFSIKSEHHSGPNTKGGTRKFTATGMRNRKGKDNTFVERSLHESSESIDIASTNGIFNKNLYSLTQQVKESQQDKRHSFTNYECVNDVIDDKCDTRHVQIDVRDPLPSSLPCGNKQGSYMALFASMHRTL 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00712 863 MobiDBLite consensus disorder prediction 705 754 - -
Aip05g00712 863 MobiDBLite consensus disorder prediction 1 42 - -
Aip05g00712 863 PANTHER OS03G0181600 PROTEIN 366 636 - -
Aip05g00712 863 PANTHER OS03G0181600 PROTEIN 57 362 - -
Aip05g00712 863 Pfam FAR1 DNA-binding domain 74 164 IPR004330 -
Aip05g00712 863 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 366 636 IPR031052 GO:0006355
Aip05g00712 863 ProSiteProfiles Zinc finger SWIM-type profile. 529 567 IPR007527 GO:0008270
Aip05g00712 863 ProSiteProfiles Zinc finger CCHC-type profile. 683 698 IPR001878 GO:0003676|GO:0008270
Aip05g00712 863 MobiDBLite consensus disorder prediction 12 39 - -
Aip05g00712 863 SMART 26again6 542 569 IPR006564 GO:0008270
Aip05g00712 863 Pfam MULE transposase domain 286 363 IPR018289 -
Aip05g00712 863 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 57 362 IPR031052 GO:0006355
Aip05g00712 863 SUPERFAMILY Retrovirus zinc finger-like domains 669 701 IPR036875 GO:0003676|GO:0008270
Aip05g00712 863 MobiDBLite consensus disorder prediction 703 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00712 Aip-Chr5 9005908 9008909 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip05g00712 FAR1 2.1e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00712 - - ahf:112755379 1576.61